ZRdb KZFP & Repeats
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LTR_LTR28C

  • Name
    LTR28C
  • Repbase
    LTR28C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000482
Description :

Simian specific.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagcggcaggaggcagacaaatncctaggcagacaggggcgggtccccggtgaaaccccaccttcaagccaaagacagtttaaagcctgaaagccaagctacaagtctcggataaantccacggaccggattgagaacctctcttcccgtttggcgcgctttcctctgattgatccccacccttcacctattttacatatacctacccttccctaattggttttttnnacactgtcgtgcccacctttgagtggtgcctttgttttagcctttttttgcatactcacaaaccaatcagcacgcactcccccattctgagcccataaaagccccggacccagccacactgggagagagaccacccgacttcgggtgggggaccaccctcgcgtcccctctccgctgagagctgtttcgtcgctcaataaaattcttctccgccctcctcacccttcgattgtcagcgtaacctcattcttcttggacgcgggacaagaactcgggacccaccgaacgcgggtacgaagaaggctgtaacactgtgagccctctgccctccgccggcggagggcagccgccccacgcgacgggaagcagcggcggggccgagccagccccggagccgcgggccggagcggggcaacaggnccgnnnggggctgacagagctgttaacacgccnccgtccgtcgggctgcggacggcgggactaaaagagctaattagcacgctgtaacaccccctctggggcttcggggtcgcgggcacccctgcctgggcgccaccgcgttcccctcgtctggacgccggagtccaccgcgggagtcgcttgcgacacgcctggtccagccgcaagccccgcacggagcccgctcctgtgccggcgcttggagcggccggccggaccccgcactcgctcgctcacacaccccctcccgccgggggctgagcgcgcagtcgcggcggccgcgggatccgcgccggagtgcaagccaggcgcggcccggcgggccgagtgggcggggcgcctcctgcggcgagcccgggcccgagcaaggcccgggcaggggcgtcgccggccggagaggtctccggctggcaaagtgaccgagaaaaatcctgcgtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 1055 28.9 Moderately correlated
2 ZNF736 131 43.0 Highly correlated
3 ZNF486 53 8.6 Weakly correlated
4 ZNF382 21 99.0 Weakly correlated
5 ZNF263 18 180.0 Weakly correlated
6 ZNF251 17 94.0 Weakly correlated
7 ZNF317 12 99.0 Weakly correlated
8 ZNF75D 10 94.0 Weakly correlated
9 ZNF793 10 99.0 Weakly correlated
10 ZNF519 10 19.6 Weakly correlated
11 ZNF28 9 28.9 Moderately correlated
12 ZNF483 7 99.0 Weakly correlated
13 ZNF2 7 99.0 Weakly correlated
14 ZNF766 7 43.0 Highly correlated
15 ZNF141 7 43.0 Highly correlated
16 ZNF534 6 19.6 Weakly correlated
17 ZNF705B 6 28.9 Moderately correlated
18 ZNF133 6 99.0 Weakly correlated
19 ZNF320 6 28.9 Moderately correlated
20 ZNF468 6 28.9 Moderately correlated
21 ZNF674 5 99.0 Weakly correlated
22 ZNF257 5 0.0 Weakly correlated
23 ZNF679 4 28.9 Moderately correlated
24 ZNF479 4 6.4 Weakly correlated
25 ZNF506 4 28.9 Moderately correlated
26 ZFP57 4 87.0 Weakly correlated
27 ZNF705D 3 28.9 Moderately correlated
28 ZNF274 3 99.0 Weakly correlated
29 ZNF197 3 99.0 Weakly correlated
30 ZKSCAN1 3 160.0 Weakly correlated
31 ZNF510 2 99.0 Weakly correlated
32 ZNF682 2 28.9 Moderately correlated
33 ZNF559 2 74.0 Weakly correlated
34 ZNF490 2 43.0 Highly correlated
35 ZNF560 2 43.0 Highly correlated
36 ZNF597 2 94.0 Weakly correlated
37 ZNF605 2 99.0 Weakly correlated
38 ZNF669 2 43.0 Highly correlated
39 ZNF735 2 28.9 Moderately correlated
40 ZNF273 2 28.9 Moderately correlated
41 ZNF234 2 99.0 Weakly correlated
42 ZNF765 2 8.6 Weakly correlated
43 ZNF222 2 43.0 Highly correlated
44 ZNF18 2 160.0 Weakly correlated
45 ZNF140 2 99.0 Weakly correlated
46 ZNF114 2 28.9 Moderately correlated
47 ZNF8 1 99.0 Weakly correlated
48 ZNF707 1 74.0 Weakly correlated
49 PRDM9 1 0.0 Weakly correlated
50 ZNF813 1 28.9 Moderately correlated
51 ZNF671 1 94.0 Weakly correlated
52 ZNF786 1 99.0 Weakly correlated
53 ZNF780A 1 43.0 Highly correlated
54 ZNF747 1 43.0 Highly correlated
55 ZNF723 1 15.2 Weakly correlated
56 ZNF33A 1 99.0 Weakly correlated
57 ZFP37 1 99.0 Weakly correlated
58 ZFP69B 1 99.0 Weakly correlated
59 ZKSCAN8 1 160.0 Weakly correlated
60 ZNF157 1 99.0 Weakly correlated
61 ZNF175 1 94.0 Weakly correlated
62 ZNF177 1 94.0 Weakly correlated
63 ZNF224 1 69.0 Weakly correlated
64 ZNF284 1 43.0 Highly correlated
65 ZNF287 1 99.0 Weakly correlated
66 ZNF324 1 99.0 Weakly correlated
67 ZNF610 1 28.9 Moderately correlated
68 ZNF429 1 28.9 Moderately correlated
69 ZNF44 1 43.0 Highly correlated
70 ZNF485 1 94.0 Weakly correlated
71 ZNF500 1 160.0 Weakly correlated
72 ZNF528 1 43.0 Highly correlated
73 ZNF530 1 28.9 Moderately correlated
74 ZNF549 1 87.0 Weakly correlated
75 ZNF554 1 99.0 Weakly correlated
76 ZNF589 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 203 28.9 Moderately correlated
2 ZNF736 128 43.0 Highly correlated
3 ZNF28 7 28.9 Moderately correlated
4 ZNF468 6 28.9 Moderately correlated
5 ZNF133 5 99.0 Weakly correlated
6 ZNF75D 5 94.0 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF793 4 99.0 Weakly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF2 3 99.0 Weakly correlated
11 ZNF141 3 43.0 Highly correlated
12 ZNF597 2 94.0 Weakly correlated
13 ZNF320 2 28.9 Moderately correlated
14 ZNF479 2 6.4 Weakly correlated
15 ZNF674 2 99.0 Weakly correlated
16 PRDM9 1 0.0 Weakly correlated
17 ZNF197 1 99.0 Weakly correlated
18 ZNF530 1 28.9 Moderately correlated
19 ZNF483 1 99.0 Weakly correlated
20 ZNF33A 1 99.0 Weakly correlated
21 ZNF287 1 99.0 Weakly correlated
22 ZNF766 1 43.0 Highly correlated
23 ZNF273 1 28.9 Moderately correlated
24 ZNF669 1 43.0 Highly correlated
25 ZNF735 1 28.9 Moderately correlated
26 ZNF506 1 28.9 Moderately correlated
27 ZNF251 1 94.0 Weakly correlated
28 ZNF780A 1 43.0 Highly correlated
29 ZNF257 1 0.0 Weakly correlated
30 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF28 28.9 Moderately correlated
2 ZNF468 28.9 Moderately correlated