ZRdb KZFP & Repeats
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LTR_LTR28B

  • Name
    LTR28B
  • Repbase
    LTR28B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000481
Description :

Simian specific.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagaggcaggaggcagagaaattctaggcagacaggggcgggtccccggcgaaaccccaccttcaagccgaaanagcctgaaacccgcggcccaaagtgagaacttctatccctgtttgcccgctctctcccgattggttctttctgaataatgtctttttaccaatcgaatgttgccttttccaaaactacctacggcccgccccgcccnccccnatcctgtgcctataaagaccccagactcagtcggtagagagagagaagcggctngacnncgnnnncgnnnnntgnnnngagagaggcggctngacttcggggaagagagacggcttgacttcggggaagagacggcttgacttcggggaanagangnggagacggccngacttcggggaagactacctgcccttcccgtcccctctccagctcccctctccgctgagagccgtttccatcgctcaataaaattctccgccttcaccatccttcaantgtccgcgcgacctcattcttcttggacgccggacaagagctcgggacccaccgagtgcgggtacccaaaaaaggctgtcacactggccctttgccctcgctggcggagggcagccgccccacgcgacgaggcaaggggcccactgagctgataacacaccgctgtccgcggacggcggagctaagagagcattgtaacacgccctctggggcttcggggtcgcaggcacccccacctgggcgccgccgcgggncccgcacggancttgctggccggntcctgcactcgctcgcncgtgcntgntctggccacgggccccgcacggagcttgctcctgccggcgcccgaagcggccggccggatcccgcactcgctcgctcacgtgctccctcccgcaaggggttgagcgcggcgggccgagtaaacggggcacccctgtcgcgagtccgacgaaggggtcgagaaaaatcctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 475 28.9 Moderately correlated
2 ZNF347 132 43.0 Highly correlated
3 ZNF736 60 43.0 Highly correlated
4 ZNF28 23 28.9 Moderately correlated
5 ZNF263 11 180.0 Weakly correlated
6 ZNF534 10 19.6 Weakly correlated
7 ZNF705B 10 28.9 Moderately correlated
8 ZNF519 8 19.6 Weakly correlated
9 ZNF274 8 99.0 Weakly correlated
10 ZNF479 6 6.4 Weakly correlated
11 ZNF382 6 99.0 Weakly correlated
12 ZNF705D 6 28.9 Moderately correlated
13 ZNF251 4 94.0 Weakly correlated
14 ZNF701 4 28.9 Moderately correlated
15 ZNF320 4 28.9 Moderately correlated
16 ZNF257 4 0.0 Weakly correlated
17 ZNF766 4 43.0 Highly correlated
18 ZNF793 4 99.0 Weakly correlated
19 ZFP69B 4 99.0 Weakly correlated
20 ZNF317 3 99.0 Weakly correlated
21 ZNF92 2 28.9 Moderately correlated
22 ZNF506 2 28.9 Moderately correlated
23 ZNF584 2 99.0 Weakly correlated
24 ZNF486 2 8.6 Weakly correlated
25 ZNF589 2 28.9 Moderately correlated
26 ZFP14 2 99.0 Weakly correlated
27 ZNF141 2 43.0 Highly correlated
28 ZNF786 1 99.0 Weakly correlated
29 ZNF823 1 43.0 Highly correlated
30 ZNF85 1 28.9 Moderately correlated
31 ZNF441 1 43.0 Highly correlated
32 ZNF679 1 28.9 Moderately correlated
33 ZNF649 1 28.9 Moderately correlated
34 ZNF597 1 94.0 Weakly correlated
35 ZNF483 1 99.0 Weakly correlated
36 ZNF394 1 99.0 Weakly correlated
37 ZNF224 1 69.0 Weakly correlated
38 ZNF18 1 160.0 Weakly correlated
39 ZNF175 1 94.0 Weakly correlated
40 ZNF135 1 94.0 Weakly correlated
41 ZNF133 1 99.0 Weakly correlated
42 ZNF101 1 43.0 Highly correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZIM3 1 87.0 Weakly correlated
45 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 129 43.0 Highly correlated
2 ZNF680 114 28.9 Moderately correlated
3 ZNF736 60 43.0 Highly correlated
4 ZNF28 20 28.9 Moderately correlated
5 ZNF534 5 19.6 Weakly correlated
6 ZNF479 5 6.4 Weakly correlated
7 ZNF257 4 0.0 Weakly correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZNF701 3 28.9 Moderately correlated
10 ZFP69B 2 99.0 Weakly correlated
11 ZNF320 2 28.9 Moderately correlated
12 ZFP14 2 99.0 Weakly correlated
13 ZNF679 1 28.9 Moderately correlated
14 ZNF705D 1 28.9 Moderately correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZNF382 1 99.0 Weakly correlated
17 ZNF141 1 43.0 Highly correlated
18 ZNF133 1 99.0 Weakly correlated
19 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated