ZRdb KZFP & Repeats
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LTR_LTR27E

  • Name
    LTR27E
  • Repbase
    LTR27E
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000479
Description :

Specific to simians.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagcggcaggagacagacaaattcctaggcagacagggacgggtccccaggtgaaacccgaccttcaagccaaagacagcctgaagcctgaaaaccgagctgccagttccgggtagagtccacgaccggagtgagaacttcctcgatgccttttagccaatcgaatggtgctttttccaggcccgcccatggaccaatcagcacgcactcccccattctgagcccataaaaanccccggactcagccacacagagggctacccgctttcgggccccctctcacacagagggctacccactttcgggtcccctctcgttgtcgagagctttcgttctgtcgctcaataaaattcttctnctgccttgctcactctccggtgtccgcgtaacctcattcctcttggtcgcgggacaagaacccggaacccgccgaacggcgggtgcgaaagctgtnaacactgtaaccctccctcccgctcgccgagcaacgggggagaaaaagccgctgggcgccacacgctcccgttcgccgagctgcgggagtgaagagctgtgacncnnccgngggcccagacctggagacnnnccgagnnagagctgtaacacgcccccgttcgccgagctgcgggcggcgggaacgaacgcgagctgtaacacaaacgagctgtaacacgccccccgccgttcgccgagctgcgggcggcgggaacgagagagagctgtaacatttcttgggggctcagacctcgggactccccgagcaagagctgtaacaccccttggggctccgcggttgctggcatctccgagttttcgggcgccaccgcgttcccctcgtccagacgccggcgcccaaggcggaagccgctcgcggcacgcccggtccagccgcgggctgcgcgccacggcgggcgcgggatccgggccggtagcgcgagccgagcgcagcctgccgggccgagtgggcggagcgagcccagtggcgagcccagngccgagcgaggcccgggcagaggcgccgccggccgcggagatttccggctggcgaagcggcaccgaaagaatcctgtgtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 583 28.9 Moderately correlated
2 ZNF793 85 99.0 Weakly correlated
3 ZNF736 61 43.0 Highly correlated
4 ZNF273 35 28.9 Moderately correlated
5 ZNF486 28 8.6 Weakly correlated
6 ZFP57 16 87.0 Weakly correlated
7 ZNF506 8 28.9 Moderately correlated
8 ZNF766 8 43.0 Highly correlated
9 ZNF263 8 180.0 Weakly correlated
10 ZNF534 6 19.6 Weakly correlated
11 ZNF679 6 28.9 Moderately correlated
12 ZNF519 5 19.6 Weakly correlated
13 ZNF2 5 99.0 Weakly correlated
14 ZNF394 4 99.0 Weakly correlated
15 ZNF382 4 99.0 Weakly correlated
16 ZNF251 4 94.0 Weakly correlated
17 ZNF705B 4 28.9 Moderately correlated
18 ZIM3 4 87.0 Weakly correlated
19 ZNF274 3 99.0 Weakly correlated
20 ZNF682 3 28.9 Moderately correlated
21 ZNF549 3 87.0 Weakly correlated
22 ZKSCAN1 3 160.0 Weakly correlated
23 ZNF701 2 28.9 Moderately correlated
24 ZNF558 2 99.0 Weakly correlated
25 ZNF705D 2 28.9 Moderately correlated
26 ZNF786 2 99.0 Weakly correlated
27 ZNF479 2 6.4 Weakly correlated
28 ZNF441 2 43.0 Highly correlated
29 ZNF8 2 99.0 Weakly correlated
30 ZNF350 2 99.0 Weakly correlated
31 ZNF101 2 43.0 Highly correlated
32 ZNF114 2 28.9 Moderately correlated
33 ZNF140 2 99.0 Weakly correlated
34 ZNF141 2 43.0 Highly correlated
35 ZNF224 2 69.0 Weakly correlated
36 ZNF257 2 0.0 Weakly correlated
37 ZNF28 2 28.9 Moderately correlated
38 ZNF331 2 94.0 Weakly correlated
39 ZNF282 1 319.0 Weakly correlated
40 ZNF425 1 94.0 Weakly correlated
41 ZNF878 1 43.0 Highly correlated
42 ZNF816 1 28.9 Moderately correlated
43 ZNF347 1 43.0 Highly correlated
44 ZNF792 1 94.0 Weakly correlated
45 ZNF483 1 99.0 Weakly correlated
46 ZNF780A 1 43.0 Highly correlated
47 ZNF33A 1 99.0 Weakly correlated
48 ZNF765 1 8.6 Weakly correlated
49 ZNF157 1 99.0 Weakly correlated
50 ZNF723 1 15.2 Weakly correlated
51 ZNF182 1 99.0 Weakly correlated
52 ZNF490 1 43.0 Highly correlated
53 ZNF230 1 28.9 Moderately correlated
54 ZNF337 1 43.0 Highly correlated
55 ZNF333 1 99.0 Weakly correlated
56 ZNF510 1 99.0 Weakly correlated
57 ZNF677 1 99.0 Weakly correlated
58 ZNF675 1 8.6 Weakly correlated
59 ZNF671 1 94.0 Weakly correlated
60 ZNF669 1 43.0 Highly correlated
61 ZNF626 1 0.0 Weakly correlated
62 ZNF610 1 28.9 Moderately correlated
63 ZNF585B 1 99.0 Weakly correlated
64 ZNF585A 1 99.0 Weakly correlated
65 ZNF324 1 99.0 Weakly correlated
66 ZNF557 1 15.2 Weakly correlated
67 ZNF554 1 99.0 Weakly correlated
68 ZNF334 1 99.0 Weakly correlated
69 ZNF547 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 118 28.9 Moderately correlated
2 ZNF736 60 43.0 Highly correlated
3 ZNF793 54 99.0 Weakly correlated
4 ZNF273 33 28.9 Moderately correlated
5 ZNF506 6 28.9 Moderately correlated
6 ZFP57 4 87.0 Weakly correlated
7 ZIM3 2 87.0 Weakly correlated
8 ZNF114 2 28.9 Moderately correlated
9 ZNF549 2 87.0 Weakly correlated
10 ZNF8 1 99.0 Weakly correlated
11 ZNF251 1 94.0 Weakly correlated
12 ZNF626 1 0.0 Weakly correlated
13 ZNF337 1 43.0 Highly correlated
14 ZNF28 1 28.9 Moderately correlated
15 ZNF331 1 94.0 Weakly correlated
16 ZNF486 1 8.6 Weakly correlated
17 ZNF519 1 19.6 Weakly correlated
18 ZNF334 1 99.0 Weakly correlated
19 ZNF816 1 28.9 Moderately correlated
20 ZNF534 1 19.6 Weakly correlated
21 ZNF350 1 99.0 Weakly correlated
22 ZNF766 1 43.0 Highly correlated
23 ZNF677 1 99.0 Weakly correlated
24 ZNF257 1 0.0 Weakly correlated
25 ZNF780A 1 43.0 Highly correlated
26 ZNF723 1 15.2 Weakly correlated
27 ZNF682 1 28.9 Moderately correlated
28 ZNF547 1 74.0 Weakly correlated
29 ZNF141 1 43.0 Highly correlated
30 ZNF101 1 43.0 Highly correlated
31 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF273 28.9 Moderately correlated
2 ZNF506 28.9 Moderately correlated
3 ZNF680 28.9 Moderately correlated
4 ZNF793 99.0 Weakly correlated