ZRdb KZFP & Repeats
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LTR_LTR27D

  • Name
    LTR27D
  • Repbase
    LTR27D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000478
Description :

Specific to simians.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagcgacaggagacagacaaattcctaggcagacagggacgggtccccggtgaaactccgaccttcaagccaaggacagtctaaagcctgaaaaccgagctgccagttccggatagagtccacgaccggagtgagaacttccatccccgtcttacccactctctctcgattggttccttctgaatgatgccttttaaccaatcgaatggtgctttttccaagnccacccatggaccaatcagcatcggcactcccccattctaagcccataaaaaccccggactcagcctcacagacggcnacccgctttcgggtcccctctcgctgncgagagcttnctgagagctttctttctgtcgctcaataaaattctactctgccttactcactctccggtgtccgcgtaccttattcctcttggtcgcgaggacaagaacccggaactcgccgaactgcgggagcgaaagagctgtaacgctcccgctcgccgagctgcgggcggcgggagtaaaagagctgtaacactccctcccgctcgccgaactacgggagngaagaagccgctgggcgccactccctcccgctcgccgaactacgggagcgaaaaagcca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 604 28.9 Moderately correlated
2 ZNF736 52 43.0 Highly correlated
3 ZNF486 40 8.6 Weakly correlated
4 ZNF793 19 99.0 Weakly correlated
5 ZNF382 11 99.0 Weakly correlated
6 ZNF534 10 19.6 Weakly correlated
7 ZNF506 8 28.9 Moderately correlated
8 ZNF274 6 99.0 Weakly correlated
9 ZIM3 5 87.0 Weakly correlated
10 ZNF780A 5 43.0 Highly correlated
11 ZNF766 5 43.0 Highly correlated
12 ZKSCAN1 4 160.0 Weakly correlated
13 ZNF786 4 99.0 Weakly correlated
14 ZNF589 4 28.9 Moderately correlated
15 ZKSCAN8 4 160.0 Weakly correlated
16 ZNF584 3 99.0 Weakly correlated
17 ZNF347 3 43.0 Highly correlated
18 ZNF350 3 99.0 Weakly correlated
19 ZNF263 3 180.0 Weakly correlated
20 ZNF175 3 94.0 Weakly correlated
21 ZNF92 2 28.9 Moderately correlated
22 ZNF251 2 94.0 Weakly correlated
23 ZNF679 2 28.9 Moderately correlated
24 ZNF197 2 99.0 Weakly correlated
25 ZNF273 2 28.9 Moderately correlated
26 ZNF28 2 28.9 Moderately correlated
27 ZNF723 2 15.2 Weakly correlated
28 ZNF479 2 6.4 Weakly correlated
29 ZNF44 2 43.0 Highly correlated
30 ZNF18 2 160.0 Weakly correlated
31 ZNF707 1 74.0 Weakly correlated
32 ZNF705E 1 0.0 Weakly correlated
33 ZNF778 1 74.0 Weakly correlated
34 ZNF705D 1 28.9 Moderately correlated
35 ZNF705B 1 28.9 Moderately correlated
36 ZNF701 1 28.9 Moderately correlated
37 ZNF141 1 43.0 Highly correlated
38 ZNF136 1 74.0 Weakly correlated
39 ZNF845 1 28.9 Moderately correlated
40 ZNF677 1 99.0 Weakly correlated
41 ZNF573 1 94.0 Weakly correlated
42 ZNF626 1 0.0 Weakly correlated
43 ZNF485 1 94.0 Weakly correlated
44 ZNF30 1 94.0 Weakly correlated
45 ZNF320 1 28.9 Moderately correlated
46 ZNF324 1 99.0 Weakly correlated
47 ZNF331 1 94.0 Weakly correlated
48 ZNF33A 1 99.0 Weakly correlated
49 ZNF2 1 99.0 Weakly correlated
50 ZNF429 1 28.9 Moderately correlated
51 ZNF433 1 43.0 Highly correlated
52 ZNF605 1 99.0 Weakly correlated
53 ZNF490 1 43.0 Highly correlated
54 ZNF510 1 99.0 Weakly correlated
55 ZNF547 1 74.0 Weakly correlated
56 ZNF549 1 87.0 Weakly correlated
57 ZNF557 1 15.2 Weakly correlated
58 ZNF563 1 28.9 Moderately correlated
59 ZNF304 1 99.0 Weakly correlated
60 ZNF585A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 126 28.9 Moderately correlated
2 ZNF736 52 43.0 Highly correlated
3 ZNF793 10 99.0 Weakly correlated
4 ZNF534 6 19.6 Weakly correlated
5 ZNF780A 5 43.0 Highly correlated
6 ZIM3 4 87.0 Weakly correlated
7 ZNF486 3 8.6 Weakly correlated
8 ZNF273 2 28.9 Moderately correlated
9 ZNF382 2 99.0 Weakly correlated
10 ZNF506 2 28.9 Moderately correlated
11 ZNF563 1 28.9 Moderately correlated
12 ZNF766 1 43.0 Highly correlated
13 ZNF331 1 94.0 Weakly correlated
14 ZNF347 1 43.0 Highly correlated
15 ZNF679 1 28.9 Moderately correlated
16 ZNF350 1 99.0 Weakly correlated
17 ZNF324 1 99.0 Weakly correlated
18 ZNF479 1 6.4 Weakly correlated
19 ZNF44 1 43.0 Highly correlated
20 ZNF778 1 74.0 Weakly correlated
21 ZNF433 1 43.0 Highly correlated
22 ZNF274 1 99.0 Weakly correlated
23 ZNF141 1 43.0 Highly correlated
24 ZNF136 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats