ZRdb KZFP & Repeats
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LTR_LTR27C

  • Name
    LTR27C
  • Repbase
    LTR27C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000477
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagcggcaggaggcagacaaatgcctaggcagataggggcgggtccccggtgaaaccccaccttcaagccaaagacagtttaaagcctgaaagccaagctacaagtcncggntaaatccacggaccggattgagaacctgtcttcccgtttggcgcgctttcctctgattgatcncccacccttcacctattttacatatacctacccttccctaattggnnttttttacactgtcgtgcccacctttgagtggtgcctttgttttagcctttttttgcatactcacaaaccaatcagcacgcactcccctattctgagcccataaaagccccggacccagccacactgggagagannaaccacccgacttcgggtgggggaccaccctcgcgtcccctctccgctgagagctgttccgtcgctcaataaaattcttctccgccctcctcacccttcaattgtcagcgtancctcattcttcttggacgcgggacaagaactcgggaaccgccgaacgcgggtacgannnnngctgtaacacaggcgggctggggcacgcccggcccagccgcgggctgagcgcgnnnnctgcgncgnncgcgnnnnncgnnccggtgcgcaagccaggcgcggcccggcgggccgagtgggcggggcgcctcctgcggcanggccgggggccgagcgaggcccgggcgggggcgtcgccggccanccgtggaggtccccggctggcaaagtgaccgagaaaaatcctgcgtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 604 28.9 Moderately correlated
2 ZNF736 51 43.0 Highly correlated
3 ZNF486 35 8.6 Weakly correlated
4 ZNF766 13 43.0 Highly correlated
5 ZNF263 9 180.0 Weakly correlated
6 ZNF317 6 99.0 Weakly correlated
7 ZNF141 6 43.0 Highly correlated
8 ZNF506 5 28.9 Moderately correlated
9 ZNF705B 4 28.9 Moderately correlated
10 ZNF793 4 99.0 Weakly correlated
11 ZNF28 4 28.9 Moderately correlated
12 ZNF382 4 99.0 Weakly correlated
13 ZNF394 4 99.0 Weakly correlated
14 ZNF534 3 19.6 Weakly correlated
15 ZNF251 3 94.0 Weakly correlated
16 ZNF519 3 19.6 Weakly correlated
17 ZKSCAN1 3 160.0 Weakly correlated
18 ZNF75D 3 94.0 Weakly correlated
19 ZFP37 2 99.0 Weakly correlated
20 ZNF780A 2 43.0 Highly correlated
21 ZNF589 2 28.9 Moderately correlated
22 ZNF479 2 6.4 Weakly correlated
23 ZKSCAN8 2 160.0 Weakly correlated
24 ZNF197 2 99.0 Weakly correlated
25 ZNF18 2 160.0 Weakly correlated
26 ZNF182 2 99.0 Weakly correlated
27 ZNF175 2 94.0 Weakly correlated
28 ZNF765 1 8.6 Weakly correlated
29 ZNF878 1 43.0 Highly correlated
30 ZNF823 1 43.0 Highly correlated
31 ZNF707 1 74.0 Weakly correlated
32 ZNF705D 1 28.9 Moderately correlated
33 ZNF597 1 94.0 Weakly correlated
34 ZNF584 1 99.0 Weakly correlated
35 ZNF568 1 99.0 Weakly correlated
36 ZNF554 1 99.0 Weakly correlated
37 ZNF528 1 43.0 Highly correlated
38 ZNF468 1 28.9 Moderately correlated
39 ZNF320 1 28.9 Moderately correlated
40 ZNF257 1 0.0 Weakly correlated
41 ZNF101 1 43.0 Highly correlated
42 ZKSCAN5 1 160.0 Weakly correlated
43 ZIM3 1 87.0 Weakly correlated
44 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 119 28.9 Moderately correlated
2 ZNF736 48 43.0 Highly correlated
3 ZNF141 4 43.0 Highly correlated
4 ZNF506 3 28.9 Moderately correlated
5 ZNF75D 2 94.0 Weakly correlated
6 ZNF766 2 43.0 Highly correlated
7 ZNF28 2 28.9 Moderately correlated
8 ZNF780A 2 43.0 Highly correlated
9 ZIM3 1 87.0 Weakly correlated
10 ZNF175 1 94.0 Weakly correlated
11 ZNF584 1 99.0 Weakly correlated
12 ZNF707 1 74.0 Weakly correlated
13 ZNF263 1 180.0 Weakly correlated
14 ZNF320 1 28.9 Moderately correlated
15 ZNF534 1 19.6 Weakly correlated
16 ZNF589 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats