ZRdb KZFP & Repeats
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LTR_LTR2752

  • Name
    LTR2752
  • Repbase
    LTR2752
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000475
Description :

5' region is similar to LTR27; 3' similar to MER52. Though supposed tolook like a hybrid of LTR27 and MER52, it aligns over its entire lengthto part of the oversized MER52A consensus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatggcggcgggaggcagacaggttcctaggcgggaaggggcgggtccccggtgaaaccccaccttcaagccagggacggcctgaagcctgggggccgggctgccagttccgggtggagtccgcgacccggagtgagaacttccttgatgcctttcggccaatcggatggtgctttttccaggcccgcccatggccgcccatggaccaatcagcacgcacttcctccattctgagcccataaaaaccccggactcagccagactcagacactcgtcgggacnacctgcctgcggataggagctacccacttcgggtctcctctccgctgagagctgttctgtcgctcaataaagctcctctccgccttgctcaccctccagttgtccgcgtaacctcattcttcctggacgcgggacaagaactcgggacccgccgaacggcgggagcgaaaggagctgtaacacgttcctggccggctcgccgagctgcgggcggtgacacgctcccggactgcgggagtgaagagcggcgacccttctgggggcccagacctcgggattccccgagccagagctgctgtaacactatagccctcccgccctccgccggcgccgggcggccgccccacgcgacgggaagcagcggcggggccgggccagcccaggagccgcgggccggagcggggcggcgggactgaaagagctgtaacacaaacgggctgaaacacgccccacccgctcgccgcgctgcgggcgacgagaaggagagaagagctgcggcccttctgggagcccagacctcggggctccccgagccagggctgtgacacgctgtaacaccctctttggggctctgcggttcctggcgtctccgagctttcgggcgccaccgcgttcccctcgtccagacgccggtgcccgcagcggaagccgcttgcggtacgcctggtccagccgcagcctcgcacggagccggcgcctgtgccggcgcctggagctgcccgccccgccgcagcagccggcgtgcctggctgtgcgcagtggccggaccccgcgctcgctcgctcacacacccctcgccgctccgcgcctggctcgcccttggcaggcgtgggatccgggccggtagcgcgagccgagcgcagcctgccgggccgagtgggcggaacgagcccagcgggcgcgagcaaaactcaagcagaggcgccgccggccacagaggtttccggctggcgaagcgacacccnaaggatcctgtgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 506 28.9 Moderately correlated
2 ZNF736 70 43.0 Highly correlated
3 ZNF793 42 99.0 Weakly correlated
4 ZNF273 39 28.9 Moderately correlated
5 ZNF486 15 8.6 Weakly correlated
6 ZNF382 13 99.0 Weakly correlated
7 ZNF519 13 19.6 Weakly correlated
8 ZNF263 13 180.0 Weakly correlated
9 ZNF766 12 43.0 Highly correlated
10 ZNF18 7 160.0 Weakly correlated
11 ZNF483 7 99.0 Weakly correlated
12 ZNF554 7 99.0 Weakly correlated
13 ZNF589 6 28.9 Moderately correlated
14 ZNF141 6 43.0 Highly correlated
15 ZNF547 6 74.0 Weakly correlated
16 ZNF479 6 6.4 Weakly correlated
17 ZFP57 6 87.0 Weakly correlated
18 ZNF705B 5 28.9 Moderately correlated
19 ZKSCAN1 5 160.0 Weakly correlated
20 ZNF175 4 94.0 Weakly correlated
21 ZNF723 4 15.2 Weakly correlated
22 ZNF114 4 28.9 Moderately correlated
23 ZNF394 4 99.0 Weakly correlated
24 ZFP69B 3 99.0 Weakly correlated
25 ZNF616 3 43.0 Highly correlated
26 ZNF506 3 28.9 Moderately correlated
27 ZNF763 3 15.2 Weakly correlated
28 ZKSCAN8 3 160.0 Weakly correlated
29 ZNF251 3 94.0 Weakly correlated
30 ZNF317 3 99.0 Weakly correlated
31 ZNF274 3 99.0 Weakly correlated
32 ZNF8 2 99.0 Weakly correlated
33 ZNF780A 2 43.0 Highly correlated
34 ZNF75D 2 94.0 Weakly correlated
35 ZNF679 2 28.9 Moderately correlated
36 ZNF584 2 99.0 Weakly correlated
37 ZNF560 2 43.0 Highly correlated
38 ZNF534 2 19.6 Weakly correlated
39 ZNF324 2 99.0 Weakly correlated
40 ZNF320 2 28.9 Moderately correlated
41 ZNF169 1 94.0 Weakly correlated
42 ZNF334 1 99.0 Weakly correlated
43 ZNF813 1 28.9 Moderately correlated
44 ZIM3 1 87.0 Weakly correlated
45 ZNF417 1 28.9 Moderately correlated
46 ZNF100 1 28.9 Moderately correlated
47 ZNF441 1 43.0 Highly correlated
48 ZNF75A 1 94.0 Weakly correlated
49 ZNF747 1 43.0 Highly correlated
50 ZNF140 1 99.0 Weakly correlated
51 ZNF735 1 28.9 Moderately correlated
52 ZNF14 1 69.0 Weakly correlated
53 ZNF705D 1 28.9 Moderately correlated
54 ZNF157 1 99.0 Weakly correlated
55 ZNF701 1 28.9 Moderately correlated
56 ZNF28 1 28.9 Moderately correlated
57 ZNF44 1 43.0 Highly correlated
58 ZNF674 1 99.0 Weakly correlated
59 ZNF197 1 99.0 Weakly correlated
60 ZNF605 1 99.0 Weakly correlated
61 ZNF585A 1 99.0 Weakly correlated
62 ZNF480 1 43.0 Highly correlated
63 ZNF2 1 99.0 Weakly correlated
64 ZNF558 1 99.0 Weakly correlated
65 ZNF490 1 43.0 Highly correlated
66 ZNF282 1 319.0 Weakly correlated
67 ZNF500 1 160.0 Weakly correlated
68 ZNF283 1 99.0 Weakly correlated
69 ZNF510 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 98 28.9 Moderately correlated
2 ZNF736 68 43.0 Highly correlated
3 ZNF273 38 28.9 Moderately correlated
4 ZNF793 26 99.0 Weakly correlated
5 ZNF141 5 43.0 Highly correlated
6 ZNF479 4 6.4 Weakly correlated
7 ZNF263 3 180.0 Weakly correlated
8 ZNF723 2 15.2 Weakly correlated
9 ZFP57 2 87.0 Weakly correlated
10 ZKSCAN1 2 160.0 Weakly correlated
11 ZNF18 2 160.0 Weakly correlated
12 ZNF75A 1 94.0 Weakly correlated
13 ZNF320 1 28.9 Moderately correlated
14 ZNF506 1 28.9 Moderately correlated
15 ZNF674 1 99.0 Weakly correlated
16 ZNF780A 1 43.0 Highly correlated
17 ZNF283 1 99.0 Weakly correlated
18 ZNF483 1 99.0 Weakly correlated
19 ZNF560 1 43.0 Highly correlated
20 ZNF705B 1 28.9 Moderately correlated
21 ZNF766 1 43.0 Highly correlated
22 ZNF679 1 28.9 Moderately correlated
23 ZNF763 1 15.2 Weakly correlated
24 ZNF735 1 28.9 Moderately correlated
25 ZNF8 1 99.0 Weakly correlated
26 ZNF585A 1 99.0 Weakly correlated
27 ZNF417 1 28.9 Moderately correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZNF705D 1 28.9 Moderately correlated
30 ZNF534 1 19.6 Weakly correlated
31 ZNF510 1 99.0 Weakly correlated
32 ZNF317 1 99.0 Weakly correlated
33 ZIM3 1 87.0 Weakly correlated
34 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF273 28.9 Moderately correlated
2 ZNF793 99.0 Weakly correlated