ZRdb KZFP & Repeats
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LTR_LTR27

  • Name
    LTR27
  • Repbase
    LTR27
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000474
Description :

LTR of endogenous retroviruses related to MER4-int, MER41-int, MER57-intMER65-int. 4bp TSD.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatagcggcaggaggcagccaaatgcctaggcagataggggcgggtccccggtgaaaccccacctccaagccgaagacagtttaaagcctgaaagccaagctacaagttaaatcctcggaccggattgagaacttgtcttcccgtttggcgcgctttcctctgattgatccccacccttcacctattttacatatacctaccctttcctaattggttttctacactgtcgtgcccacctttgagtggtgtcttcgctttaaccttttttgcatactcacaaaccaatcagcacgcactccccattctgagtccataaaaggccccggacccagccacacgggggactttcccgccttcgggtagggggaccacccccgcgtcccctctccgctgagagctgttccgtcgctcaataaaattcttctccgccctcctcacccttcaatgtccagcgtatcctcattcttcttgggcgcgggacaagagctcgggaaccgccgaacgcgggtacaagctataacacaggcgagccgagtgggcagggcgcctccngcggcaggcagcgaggcccgggcggggcgtcgccggccgtggaggtccccggcttgcaaagtgaccgagaaaaatcctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 329 28.9 Moderately correlated
2 ZNF75D 24 94.0 Weakly correlated
3 ZNF486 9 8.6 Weakly correlated
4 ZNF382 6 99.0 Weakly correlated
5 ZNF736 5 43.0 Highly correlated
6 ZNF547 4 74.0 Weakly correlated
7 ZNF2 3 99.0 Weakly correlated
8 ZNF324 3 99.0 Weakly correlated
9 ZFP69B 2 99.0 Weakly correlated
10 ZNF792 2 94.0 Weakly correlated
11 ZNF705D 2 28.9 Moderately correlated
12 ZNF705B 2 28.9 Moderately correlated
13 ZNF682 2 28.9 Moderately correlated
14 ZNF610 2 28.9 Moderately correlated
15 ZNF597 2 94.0 Weakly correlated
16 ZNF558 2 99.0 Weakly correlated
17 ZNF394 2 99.0 Weakly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZIM3 2 87.0 Weakly correlated
20 ZNF101 2 43.0 Highly correlated
21 ZNF18 2 160.0 Weakly correlated
22 ZNF251 2 94.0 Weakly correlated
23 ZNF263 2 180.0 Weakly correlated
24 ZNF264 2 99.0 Weakly correlated
25 ZNF701 1 28.9 Moderately correlated
26 ZNF445 1 99.0 Weakly correlated
27 ZNF778 1 74.0 Weakly correlated
28 ZNF766 1 43.0 Highly correlated
29 ZNF528 1 43.0 Highly correlated
30 ZKSCAN1 1 160.0 Weakly correlated
31 ZNF723 1 15.2 Weakly correlated
32 ZNF350 1 99.0 Weakly correlated
33 ZNF140 1 99.0 Weakly correlated
34 ZNF589 1 28.9 Moderately correlated
35 ZNF695 1 28.9 Moderately correlated
36 ZNF182 1 99.0 Weakly correlated
37 ZNF554 1 99.0 Weakly correlated
38 ZNF671 1 94.0 Weakly correlated
39 ZNF616 1 43.0 Highly correlated
40 ZNF585A 1 99.0 Weakly correlated
41 ZNF596 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 67 28.9 Moderately correlated
2 ZNF75D 13 94.0 Weakly correlated
3 ZNF736 4 43.0 Highly correlated
4 ZNF597 2 94.0 Weakly correlated
5 ZNF671 1 94.0 Weakly correlated
6 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 94.0 Weakly correlated