ZRdb KZFP & Repeats
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LTR_LTR26E

  • Name
    LTR26E
  • Repbase
    LTR26E
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000473
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgtcctcacagggttaacaagaattacatgccgggttctggacagaaatatagttataattaagcattaatcaggctgcactttggcccacttccttgtaaccgaaagtcacgtagcactagatactgaccatttgcatccccattgttcctatagataggatttctgacgttagaatcataggcttttgtttaagaattgatttgcatccccattgttcctatagataggatctctgacgttagaatcataaggcttttgtttaagaattgcttaagatgtttttcagatcctgaattccagcggaacggctgacgccaaccagtttgaagacccccacagaggaaccgaatcagcatgagaatgcggtttcttcatctccctgtcccatgacttcaccctgcactcttcgaccaatcaacgatccccacacctcggcccactccaaaccccttaaaatccctagccccaaactcctcggggaggcggatttgaggtttcctcccgtctcctcgttcggctgccctacgattattaaactctttctctgctgcaaccctggtgtctcggcgtattgacttgccgcgcatcgggcaacgaacctattacggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 15 43.0 Weakly correlated
2 ZNF2 7 99.0 Weakly correlated
3 ZNF441 7 43.0 Weakly correlated
4 ZFP37 6 99.0 Weakly correlated
5 ZNF382 6 99.0 Weakly correlated
6 ZNF394 6 99.0 Weakly correlated
7 ZNF589 6 28.9 Weakly correlated
8 ZNF175 6 94.0 Weakly correlated
9 ZNF823 6 43.0 Weakly correlated
10 ZKSCAN8 4 160.0 Weakly correlated
11 ZFP69B 4 99.0 Weakly correlated
12 ZNF197 3 99.0 Weakly correlated
13 ZNF584 3 99.0 Weakly correlated
14 ZNF479 3 6.4 Weakly correlated
15 ZNF263 3 180.0 Weakly correlated
16 ZNF75D 2 94.0 Weakly correlated
17 ZNF707 2 74.0 Highly correlated
18 ZNF792 2 94.0 Weakly correlated
19 ZNF799 2 43.0 Weakly correlated
20 ZFP57 2 87.0 Weakly correlated
21 ZNF273 2 28.9 Weakly correlated
22 ZNF28 2 28.9 Weakly correlated
23 ZKSCAN5 2 160.0 Weakly correlated
24 ZNF101 2 43.0 Weakly correlated
25 ZNF18 2 160.0 Weakly correlated
26 ZNF92 1 28.9 Weakly correlated
27 ZNF91 1 6.0 Weakly correlated
28 ZIM3 1 87.0 Weakly correlated
29 ZKSCAN1 1 160.0 Weakly correlated
30 ZNF793 1 99.0 Weakly correlated
31 ZNF141 1 43.0 Weakly correlated
32 ZNF701 1 28.9 Weakly correlated
33 ZNF679 1 28.9 Weakly correlated
34 ZNF202 1 160.0 Weakly correlated
35 ZNF230 1 28.9 Weakly correlated
36 ZNF251 1 94.0 Weakly correlated
37 ZNF44 1 43.0 Weakly correlated
38 ZNF442 1 43.0 Weakly correlated
39 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 9 43.0 Weakly correlated
2 ZNF823 6 43.0 Weakly correlated
3 ZKSCAN5 2 160.0 Weakly correlated
4 ZNF441 2 43.0 Weakly correlated
5 ZNF479 2 6.4 Weakly correlated
6 ZNF230 1 28.9 Weakly correlated
7 ZNF263 1 180.0 Weakly correlated
8 ZNF679 1 28.9 Weakly correlated
9 ZNF382 1 99.0 Weakly correlated
10 ZNF799 1 43.0 Weakly correlated
11 ZNF257 1 0.0 Weakly correlated
12 ZNF28 1 28.9 Weakly correlated
13 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF766 43.0 Weakly correlated
2 ZNF823 43.0 Weakly correlated