ZRdb KZFP & Repeats
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LTR_LTR26C

  • Name
    LTR26C
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    0.0 Mya
  • Dfam Id
    DF0000471
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaagccgtcctcacagggttaacaagaattctggacagaaatatagttataattaagcattaatcaggctgcactttggcccacttccttgtaaccgaaagtcacgtagcactagatactgaccatttgcatccccattgttcctatagataggatttctgacgttagaatcataaggcttttgtttaagaattgcttaagatgtttttcagatcccgaattccagcgaaacagctgacgccaaccagtttgaagacccccacagaggaacggaatcagcatgagaatacagtttcttcatctccctgtcccatgacttcaccctgcactcttcgaccaatcaacgatctccacacttcggcccactccaaaacccttaaaaaccctagccccaaactcctcggggagacggatttgaggtttcctcccatctcctcgttcggcggccctacgattaaacctctttctctgctgcaacccggtgtctcggcgtattgacttgccgcgcgcatcgggcaacggacctattacggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 45 43.0 Weakly correlated
2 ZNF823 12 43.0 Weakly correlated
3 ZNF382 8 99.0 Weakly correlated
4 ZNF534 6 19.6 Weakly correlated
5 ZNF317 6 99.0 Weakly correlated
6 ZNF441 5 43.0 Weakly correlated
7 ZNF263 5 180.0 Weakly correlated
8 ZNF799 4 43.0 Weakly correlated
9 ZNF547 4 74.0 Weakly correlated
10 ZNF394 4 99.0 Weakly correlated
11 ZFP57 3 87.0 Weakly correlated
12 ZNF679 3 28.9 Weakly correlated
13 ZNF479 3 6.4 Weakly correlated
14 ZNF44 3 43.0 Weakly correlated
15 ZFP37 3 99.0 Weakly correlated
16 ZNF140 3 99.0 Weakly correlated
17 ZIM3 3 87.0 Weakly correlated
18 ZNF2 2 99.0 Weakly correlated
19 ZNF549 2 87.0 Weakly correlated
20 ZNF490 2 43.0 Weakly correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZNF197 2 99.0 Weakly correlated
23 ZNF778 2 74.0 Weakly correlated
24 ZFP69B 2 99.0 Weakly correlated
25 ZNF705B 1 28.9 Weakly correlated
26 ZNF701 1 28.9 Weakly correlated
27 ZNF674 1 99.0 Weakly correlated
28 ZNF28 1 28.9 Weakly correlated
29 ZNF671 1 94.0 Weakly correlated
30 ZNF641 1 99.0 Weakly correlated
31 ZNF558 1 99.0 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF92 1 28.9 Weakly correlated
34 ZKSCAN5 1 160.0 Weakly correlated
35 ZKSCAN8 1 160.0 Weakly correlated
36 ZNF519 1 19.6 Weakly correlated
37 ZNF506 1 28.9 Weakly correlated
38 ZNF480 1 43.0 Weakly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZNF182 1 99.0 Weakly correlated
41 ZNF41 1 99.0 Weakly correlated
42 ZNF202 1 160.0 Weakly correlated
43 ZNF33A 1 99.0 Weakly correlated
44 ZNF331 1 94.0 Weakly correlated
45 ZNF324 1 99.0 Weakly correlated
46 ZNF273 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 22 43.0 Weakly correlated
2 ZNF823 12 43.0 Weakly correlated
3 ZNF534 6 19.6 Weakly correlated
4 ZNF799 4 43.0 Weakly correlated
5 ZNF44 3 43.0 Weakly correlated
6 ZIM3 2 87.0 Weakly correlated
7 ZFP57 1 87.0 Weakly correlated
8 ZKSCAN5 1 160.0 Weakly correlated
9 ZNF33A 1 99.0 Weakly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF331 1 94.0 Weakly correlated
12 ZNF549 1 87.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF671 1 94.0 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
16 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated
2 ZNF823 43.0 Weakly correlated