ZRdb KZFP & Repeats
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LTR_LTR26

  • Name
    LTR26
  • Repbase
    LTR26
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000469
Description :

4 bp target site duplications.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgtccctataaactttataaaattaatcagggaagaagggagggggagaaacgaaaataaaccaagcttgcagcacattcagcattaatcattaggtcagcttgctctctgacctgcttcctcatagttgtttggtgcctattgccccagaatcacgtagaccctgttacaagattatagttccccttaactgctctatagataacaacttgaacattatgaaacgttaagttttccctttgagatattctttcaggtcctgcataccggtgaaactactgacanncgncgtcagctggtctgaaggaccccacgaggagctgactcaccaaagaatgcagtttccacatcctgatgatttcatcccccttaccccgaccaatcaacgaccccaattttccagcccctcgccctccacgatccccttaaaaaccccagcccagaactcctcggggagatggatttgagggtctcctcccatctcctcgctcggcgccctgcgatcattaaactctttctctgctgcaaaccctgctgtctcagtgtaattggtctgttactgcgcagcgggcatacgaacctgttggtcctataaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF823 192 43.0 Weakly correlated
2 ZNF382 52 99.0 Weakly correlated
3 ZNF766 22 43.0 Weakly correlated
4 ZNF394 19 99.0 Weakly correlated
5 ZFP37 18 99.0 Weakly correlated
6 ZNF317 17 99.0 Weakly correlated
7 ZNF799 17 43.0 Weakly correlated
8 ZNF175 15 94.0 Weakly correlated
9 ZNF584 12 99.0 Weakly correlated
10 ZNF324 12 99.0 Weakly correlated
11 ZNF140 11 99.0 Weakly correlated
12 ZNF479 11 6.4 Weakly correlated
13 ZNF549 11 87.0 Weakly correlated
14 ZNF2 11 99.0 Weakly correlated
15 ZKSCAN8 9 160.0 Weakly correlated
16 ZNF589 9 28.9 Weakly correlated
17 ZKSCAN1 8 160.0 Weakly correlated
18 ZNF441 8 43.0 Weakly correlated
19 ZFP69B 8 99.0 Weakly correlated
20 ZNF554 8 99.0 Weakly correlated
21 ZNF251 7 94.0 Weakly correlated
22 ZNF558 7 99.0 Weakly correlated
23 ZNF263 6 180.0 Weakly correlated
24 ZNF197 6 99.0 Weakly correlated
25 ZNF680 5 28.9 Weakly correlated
26 ZNF490 5 43.0 Weakly correlated
27 ZNF425 5 94.0 Weakly correlated
28 ZNF18 5 160.0 Weakly correlated
29 ZNF585B 4 99.0 Weakly correlated
30 ZNF610 4 28.9 Weakly correlated
31 ZNF679 4 28.9 Weakly correlated
32 ZNF793 3 99.0 Weakly correlated
33 ZNF101 3 43.0 Weakly correlated
34 ZNF133 3 99.0 Weakly correlated
35 ZNF8 3 99.0 Weakly correlated
36 ZIM3 3 87.0 Weakly correlated
37 ZNF534 3 19.6 Weakly correlated
38 ZNF320 3 28.9 Weakly correlated
39 ZNF701 3 28.9 Weakly correlated
40 ZNF705B 3 28.9 Weakly correlated
41 ZNF44 3 43.0 Weakly correlated
42 ZNF705D 3 28.9 Weakly correlated
43 ZFP57 3 87.0 Weakly correlated
44 ZNF707 3 74.0 Highly correlated
45 ZNF778 2 74.0 Highly correlated
46 ZNF641 2 99.0 Weakly correlated
47 ZNF792 2 94.0 Weakly correlated
48 ZNF75D 2 94.0 Weakly correlated
49 ZNF485 2 94.0 Weakly correlated
50 ZNF559 2 74.0 Highly correlated
51 ZNF248 2 99.0 Weakly correlated
52 ZNF547 2 74.0 Highly correlated
53 ZNF506 2 28.9 Weakly correlated
54 ZNF429 2 28.9 Weakly correlated
55 ZNF442 2 43.0 Weakly correlated
56 ZNF483 1 99.0 Weakly correlated
57 ZNF92 1 28.9 Weakly correlated
58 ZNF169 1 94.0 Weakly correlated
59 ZNF28 1 28.9 Weakly correlated
60 ZNF304 1 99.0 Weakly correlated
61 ZNF354C 1 99.0 Weakly correlated
62 ZNF417 1 28.9 Weakly correlated
63 ZNF433 1 43.0 Weakly correlated
64 ZNF440 1 28.9 Weakly correlated
65 ZNF567 1 99.0 Weakly correlated
66 ZFP30 1 99.0 Weakly correlated
67 ZNF519 1 19.6 Weakly correlated
68 ZNF674 1 99.0 Weakly correlated
69 ZNF671 1 94.0 Weakly correlated
70 ZNF626 1 0.0 Weakly correlated
71 ZNF611 1 19.6 Weakly correlated
72 ZNF605 1 99.0 Weakly correlated
73 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF823 180 43.0 Weakly correlated
2 ZNF799 14 43.0 Weakly correlated
3 ZFP37 6 99.0 Weakly correlated
4 ZNF382 5 99.0 Weakly correlated
5 ZNF584 5 99.0 Weakly correlated
6 ZNF317 4 99.0 Weakly correlated
7 ZNF554 4 99.0 Weakly correlated
8 ZNF479 3 6.4 Weakly correlated
9 ZNF263 3 180.0 Weakly correlated
10 ZNF549 3 87.0 Weakly correlated
11 ZNF197 2 99.0 Weakly correlated
12 ZNF793 2 99.0 Weakly correlated
13 ZNF44 2 43.0 Weakly correlated
14 ZNF680 2 28.9 Weakly correlated
15 ZFP57 2 87.0 Weakly correlated
16 ZNF705D 2 28.9 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF441 1 43.0 Weakly correlated
19 ZNF597 1 94.0 Weakly correlated
20 ZNF534 1 19.6 Weakly correlated
21 ZFP69B 1 99.0 Weakly correlated
22 ZNF28 1 28.9 Weakly correlated
23 ZIM3 1 87.0 Weakly correlated
24 ZNF417 1 28.9 Weakly correlated
25 ZNF766 1 43.0 Weakly correlated
26 ZNF175 1 94.0 Weakly correlated
27 ZNF248 1 99.0 Weakly correlated
28 ZNF705B 1 28.9 Weakly correlated
29 ZNF92 1 28.9 Weakly correlated
30 ZNF701 1 28.9 Weakly correlated
31 ZNF626 1 0.0 Weakly correlated
32 ZNF101 1 43.0 Weakly correlated
33 ZNF433 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF799 43.0 Weakly correlated
3 ZNF823 43.0 Weakly correlated