ZRdb KZFP & Repeats
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LTR_LTR25

  • Name
    LTR25
  • Repbase
    LTR25
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000467
Description :

Putative LTR of endogenous retroviruses related to MER4-int, MER41-int,MER57-int and MER65-int. LTR25 elements share common fragments withLTR20; LTR9 and LTR12.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaggagttagctagcttgccttaggtagacagcaagggaagggtccccggagagcccccggcccacgggtcagtgcctcatccccacataacataaaaagcagcctgggaaaaaaatcaagctgcaggcaccgataagggaactagcacagggtgttgtgcctggagacatgcccacggctgcacagatagaagaacctccggcccattcggataaaaacttgcacaaacctccggctcactcagataagggaacaaggcccggcatagaaatgcctttgtcctttgtatagtcagcgggctcccaggaaaaagtttcttctccttttgtgggcatggacacggtgggctccggtgggttccggtgggcactttcctttcctttttttggactgtgagcccggcctctatgaatcatcacttcagcccctgattggtcccgggccaaggtcccgggccaagctttcacttcagctcctgatnggtcccgggccaagctgagcagcctctatgaatcatcacttcagcccctgattggtcccgggccaaggtcccgggccaagctgagtcgcgcnttctccaagacagcccgcagactaagcacattccttccccttcccagtccataaaaaccccggaccccagcctcatagtgggcaacccnttcgggcccccctctccgctggcggagagctttcttctttcgcttattaaactttcgctccaacctcacctttgtgtccgcgctccttaattttcttggncgtgagacaaagaactccgggtattatctcagacaacgagagactgctacatcttggtgcattggcgagactacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 214 28.9 Moderately correlated
2 ZNF766 34 43.0 Highly correlated
3 ZNF589 21 28.9 Moderately correlated
4 ZNF175 21 94.0 Weakly correlated
5 ZKSCAN8 18 160.0 Weakly correlated
6 ZNF197 17 99.0 Weakly correlated
7 ZNF584 13 99.0 Weakly correlated
8 ZNF736 12 43.0 Highly correlated
9 ZNF394 11 99.0 Weakly correlated
10 ZKSCAN1 10 160.0 Weakly correlated
11 ZFP37 10 99.0 Weakly correlated
12 ZNF382 9 99.0 Weakly correlated
13 ZNF681 9 28.9 Moderately correlated
14 ZNF2 9 99.0 Weakly correlated
15 ZNF18 8 160.0 Weakly correlated
16 ZFP69B 6 99.0 Weakly correlated
17 ZNF486 5 8.6 Weakly correlated
18 ZNF324 4 99.0 Weakly correlated
19 ZNF558 4 99.0 Weakly correlated
20 ZNF101 4 43.0 Highly correlated
21 ZNF429 4 28.9 Moderately correlated
22 ZNF519 4 19.6 Weakly correlated
23 ZNF549 3 87.0 Weakly correlated
24 ZNF554 3 99.0 Weakly correlated
25 ZNF585A 3 99.0 Weakly correlated
26 ZNF701 3 28.9 Moderately correlated
27 ZNF610 2 28.9 Moderately correlated
28 ZNF679 2 28.9 Moderately correlated
29 ZNF780A 2 43.0 Highly correlated
30 ZNF92 2 28.9 Moderately correlated
31 ZNF534 2 19.6 Weakly correlated
32 ZNF274 2 99.0 Weakly correlated
33 ZNF263 2 180.0 Weakly correlated
34 ZNF682 1 28.9 Moderately correlated
35 ZFP57 1 87.0 Weakly correlated
36 ZNF8 1 99.0 Weakly correlated
37 ZNF84 1 99.0 Weakly correlated
38 ZNF793 1 99.0 Weakly correlated
39 ZNF792 1 94.0 Weakly correlated
40 ZNF182 1 99.0 Weakly correlated
41 ZNF189 1 99.0 Weakly correlated
42 ZNF251 1 94.0 Weakly correlated
43 ZNF705D 1 28.9 Moderately correlated
44 ZNF705B 1 28.9 Moderately correlated
45 ZNF547 1 74.0 Weakly correlated
46 ZNF28 1 28.9 Moderately correlated
47 ZNF317 1 99.0 Weakly correlated
48 ZNF613 1 99.0 Weakly correlated
49 ZNF441 1 43.0 Highly correlated
50 ZNF479 1 6.4 Weakly correlated
51 ZNF585B 1 99.0 Weakly correlated
52 ZNF506 1 28.9 Moderately correlated
53 ZNF528 1 43.0 Highly correlated
54 ZNF563 1 28.9 Moderately correlated
55 ZNF560 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 43 28.9 Moderately correlated
2 ZNF736 10 43.0 Highly correlated
3 ZNF175 7 94.0 Weakly correlated
4 ZNF584 5 99.0 Weakly correlated
5 ZNF197 5 99.0 Weakly correlated
6 ZNF589 5 28.9 Moderately correlated
7 ZNF429 3 28.9 Moderately correlated
8 ZNF549 2 87.0 Weakly correlated
9 ZNF585A 2 99.0 Weakly correlated
10 ZNF766 2 43.0 Highly correlated
11 ZNF554 2 99.0 Weakly correlated
12 ZNF681 2 28.9 Moderately correlated
13 ZNF780A 1 43.0 Highly correlated
14 ZNF679 1 28.9 Moderately correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZFP37 1 99.0 Weakly correlated
17 ZNF528 1 43.0 Highly correlated
18 ZNF28 1 28.9 Moderately correlated
19 ZNF682 1 28.9 Moderately correlated
20 ZKSCAN1 1 160.0 Weakly correlated
21 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated