ZRdb KZFP & Repeats
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LTR_LTR25-INT

  • Name
    LTR25-INT
  • Repbase
    LTR25-int
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000468
Description :

MER4 group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tattttggtgcattggccgggaaagaaaggaattcatcagaagggtgagtaagagcggacctttaactctttactttcatttccgaggcttgtcctcagtttttttttnnnnnnnctcaagaancaaacaaaacactgggcccctgtcagccagttaaaagacnaatagcgtggctgccagccttanaagactcaggggacaggcttgctggagaggactttgtcaatcccccatcgccctcgggtgttgggaatgttggctctgttccaatccagtttcctttcacggagggcctagccgtcgcgtggggttggaaggaggtcctagggcaactgaaggtttctggccgaggctacacctcggtgttacctgaaggcccctggactaactccagtccccgacagcccatncagggtgtcggcacnaggacttccagtcttttctatcgcattttccttctttcttttcgtggctatcatgtctcctatcccttctttgtatgcaatgttgngggtgtttttgcaacctggggatataatcttgctgggtaaagtcagtcagtgccttagtaatcaggaatgtaactcaaagaattgctgtttttgtgatttcctngaaacaggggganttcaagatttcagtctaaattttcacctagtaagggcctttttgtcccccaataatagacattcatggcactgtatgggaggatatttcaccccgagtgaataccctcctctccatttgggttgttttttttcctccatgtaaaagctcagcactgcccaatgaatctaaacagttcctttatgagacaagttaattttcttctgctggggggcatactatggggacagcctatcaaaccccaaacctctctttctaacttttgcctggaaagaatttagtcagagtttttacctaacatttcnaaccctacagcgccacctagtggaatgggatttttctccgtggggagccttgtcggccctttgcccnaaacctctagttccccaattcttttccctcttacgtccctctatcagtgatcaggccccatgccctatttgtagacagaaaaactccactttcaacagccgggaggaagccaccctganaagacagatcttgcctcagtactgtccccatcaaaggaaggacagccattcaatccttacgctcttttcgaggcacctgttctgcatccaactacattggnatttaaacaaaaaagggattttatgtttggaagtcaatcggtcccattctctgggatttcgatntttcnctggggccatagcaagggaagccagagatagtgttaggacactccctccattaaagngtttgcccaaatccaactactacataatctctcccgggcccctggggtaccttgggagccttttgggccgagtgggtctaggaaaccagcagggcggaaagctagggcctcgcgcaggtaagcacatgactantcctgccgactagctcctccggatccatgggtgaaggtcacgcttgcatccatgggtggcacctatgatggtcgccgggacccagaggaganggaaggaaagaggagaagggggacgccctttctctctttccctccaccctgggtcacnccgaaaggaggaaggagactaagggacgcctttgtctcccctctctttctagatgggtaacaaaccatctncagcctgcactcccctcgagtgcattctgaancactggaactcctttgaccctgagactctgaagaaaaaacggcttatattctattgcacaagggcatggccatcttaccaggggagacagaaggcctggccttctgagggaagcgttaatttcaatactatccaacaactagatcttttctggcgggagggaaatggcggttccctatgtacaagctttctttgccctgcgagacaacccagatctttgtaagcattgtaaaattgaccctgccctcttggcagccatatcaggcaagcctacaaaggataattccccaaagtcagagagacaaacccttggggaaccctcaaatgcaacttctgggtgccctacctgccccccttatccggggcccccaatagccatatcatcagctcctccggttgtgccactcaagaaaccccnacattcgctgttgcccctgcaggaaatgcccgatggacatggtgctactagggttcaagttcccttctcattgcaggaccttagacaaataaagggggacctaggcaagttctctgatgaccctgatagatatatagaggctttccaaaatttaacccaagtgtttaatcttacatggagagatgctatgctactcttaagccaaaccctaactgctgccgagaaacaggcagccctacaggcagcagaganattcggagacaaacagtatctcctatagccagtcaaaaagaaacccagtcaaagngaaagaggtaaaaaagagacaggatccccattcccaataggaagagaaacagtgccccttgaaaaccctaattggagccctagtgatcccatagatgagtggaaaagaaaacactttctgatgtgcatattagaaggcttgcaaagaaccagaaccaaacctcttaattactctaaactgtccntgttaaatcagaaaccagatgaaaatccctcggcctttttggaaaggctgagagaagctttagtgaaacacacctccctgtctcccgattcaataaagaacaggtttattactcaggcagcccctgatatcggaaggaagttgctgaaacaggccctgtccaaanatctttctagtttttctcaccctcaagttgaaactttgcagtatgtaaatgacactctcctctgtgccccaaccgaggaggtctcaggaaggcactgaggctctcctcaatttcttagctgaaaggggatatagggtctcaaaatctaaagctcagctctgtcagacttcagtaaagtacctaggtctagtcttatcagaagggaccagagcaccaggtgaggaaaggattaagcccatttcctcctttcccttncccaaaactcttaacagttaaggggattcttaggcattactggattttgcagactgtgggtacctgggtacggtgaaatagctcaccctttataccacctcataaaagaaactcaagcagctaaaactcactccctaacttgggaacctaaaactcaaaagcctttaaccagctaaagcaagccttacttaaagcaccagccctcagtcttcccatagggaaggcattcagtctctatgtatcagaaaggaagggaatggccctgggagttttaactaaggctcgaggtccagctcaacagccagtgggttacctaagcaaggaacttgacttggtggctaaaggatggccagcctgcctccgagcagttgcagcggtggctttgctggtgccagaggccaccgggttaaccatggggaataacttaactgtttgcaccccacacagtatagcaggactgctgtcctctaagggaagtctctggctaacaatcgcctcctcaaatatcaagctttgctgctagagggatctgcagtccagttgaaaacctgcccttgcctgaacccagccactttctcccagaggaaactggagaacctgaacatgattgtgaacaggtagtggtgcaaaccggtaaaagaaatgataagaatcactgtttatattctctgtaaagttttaattaatgaaaaaggattttcttaaagagcgctcagcttaattaaaagtggatatccaagctataggtatatttaaaaggcctttatgtttttctcttcntggatcttgttttnctggaaaaggnttttttctcagtcgactgaattacttttctccattttgtcttgccactcttaatgcacgcatgagaggccctaagataacttctgatggcctgggactccttgggaaaacagaaaaggcgccacggatcccattttgggaaaaacctctgttttcctcatggaaccccaggaattagaggcggatagatccctctcaaaatctgtttttgtcttccagctatgcctgtttattaggccctagaaactgcattcctagccctgttcttgaagggctccacccngaggccaataatccaattaggagattggcaaatgaaaaatctacaactactggatcttcttctgtctgtctggtagttatatatgtgttgtgtgtgatgtctattaaaaaagctctaattaattggcttaaaaataagcgcttagatcaaatatttttaagggaaaagtaaaagctgtaatgccttttagttcacgtgactttaatctttgagaaataaaaacgtcttaaagattattggtaaaatacaaatgtcttcaaaatgtaaatatgtggtctaaattatgcaggtcagatactaggtttgctaaatgttttaaggttataaactgcttctttggcttttgaaaactgtcgacttgcctgctttacaattggtaaggcctggggacatatggaattaaccacgcccctaactatgctggaaagagtcaaaccttatctgcgcctagnacataattaaaacaacttaccaggttttacattaaagttaaaattgctaagagttaccattataacatgtaattgagactactgaaaatagatttacatgcaaggtgtgtaagaacagtaaaatgtttttagtaaaagattataagaaggcatggaaatgtaaattttgcctagggntaaaggattgttttaaattagataaagtaaaaggtttaaacaagttgtggaaggnttgtaaaaattaatcttgcaaaagaaattctgtgtgtgaacatattgactaaattcaaaagggtattatatggtttttccgtaaattgagcattgaaataaaagcacaacaaggttttcttaaggcgctaatctgctctttagcaaaatttgtaaagggttataaaaggtttataagaatctcacctcatggtcaaactggttaagattggatagaattgtctataaggtttcattaaaaattggggttgacattaatagtaaactaatgcaagggtgaaatttggctttctctcttgaacaggattttcatgtaatagtaaaggntaatgaaaggtttttgctttttnaaatttttgagtcatcattttggcaaaataaataacttatggtaatctggaattctatttcataatatcaagtgttttaaacctctaacatatttaacaggcttcccaaaatcaaacttcagtttcaaaattgtctttcctgacccctagcttttggatgctacagaggcccctggagcatccaaaagagaggtaaacaggattatttgacatgtttagntacatgggattgccaaaatgatgtttaatttcttcaggttatattttagtgaataatattaatatatgttccaaaattgtatgggatttctaaaattctaatgtctgagtatatgctatcaatcataattaaggttattatgttaagttattgtaaaccacagaaataaccaaatttctttgtcaatcgtgtttttgactgtaactaccctggacattttgtcattcacagacaattgtcttgttttgatcctcttcaaaagatggtttataatcagctataggactttgacaggtgctctcaaatgcaggtttctgataacagaaaaacgtacaggactcatgaagagctgaaatgttcatgaatatcaagcagaacaagagttaacggaatggactgaactaatagaaaactgaagtaatctttttaacttttgcttaaaacattgctgatccttgttttgtttttcagagtcaaggaaacttttgagctatttacagcctttaacaattgagtaaggtatactcctgtgaacaaaatttggagcatgtttgtttctctctgcctggttcctctagaatttggaaactanttgtgagtattcttaacttacggcaatatagttgtttgcatcagtgcaataaaatccattttcttttgcaacaggacgcaattggagaanactggttgttttaccaaggctttgactggaagggtgtgcttccctttaaggaatcaagcttgacttgcagagccaataaaagccccttgggaaaactggcctcataccttgtctacacagtccccgtacagggttcctaacctgtggtgagtaaagaatgtcactttctaacaggcccaggagcccatgttcttgggacctcaagaagagaggaatttacccaactcataggtatttgagggtacaaacccatggctgggctcggctttaaaaagtcttatctgagattccttgtggaacagagttccatcaaagccaatttaaaaggcctatgtaaaaataattattcttgctgcactttatgcaaataatcaggccaagtataagactaaagtttattttgcaaacaactcagtctatcatgatttgtttttaacaaaaatgaggactggagagagagaaattatgtttcaaaacttatcatacatttgtcattaaattctagtctcattagttgtttttaagtttttgcctacattttagactaaccctgcttattcctgtgaaccaaccagcgatctccggctgcagctcagaaaaacaaaaagggatgggtaatgtaaaaatctggatcaatattctagttctgggcaattatcctgcaaatcctgccaggtgatgggagtaaatagggtgcccataacccggaggtttctttttttgggaaaataagaccaagggagctaaccaaagccaagccccatgcacccaaatcttagcaggcataactatagccaccagttatctgggcgtgtcggcagcctcgggatttttgagctcgtccttaccccccttgtttcgttttgatacatgtcttctaataacccggtttgtctcttctcgccttcaggccatcaaactccaaatggtcatgcaaccggagccncgnatgancgcgcctttctnccggggacccttagatnggcctcngggggagncctgactgctgttcccnaaacagcgccccccgtcagcaggaagcagttagaaagatcancgcccantctccctaacggcagttagggtctccactcctgaggggggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 67 28.9 Moderately correlated
2 ZNF486 61 8.6 Weakly correlated
3 ZNF616 32 43.0 Highly correlated
4 ZNF766 28 43.0 Highly correlated
5 ZNF324 21 99.0 Weakly correlated
6 ZNF85 19 28.9 Moderately correlated
7 ZNF382 18 99.0 Weakly correlated
8 ZNF595 14 43.0 Highly correlated
9 ZKSCAN1 13 160.0 Weakly correlated
10 ZNF18 12 160.0 Weakly correlated
11 ZNF479 10 6.4 Weakly correlated
12 ZNF317 10 99.0 Weakly correlated
13 ZFP37 9 99.0 Weakly correlated
14 ZNF43 9 43.0 Highly correlated
15 ZNF320 9 28.9 Moderately correlated
16 ZNF263 8 180.0 Weakly correlated
17 ZNF2 8 99.0 Weakly correlated
18 ZNF506 7 28.9 Moderately correlated
19 ZNF528 7 43.0 Highly correlated
20 ZNF793 7 99.0 Weakly correlated
21 ZNF549 7 87.0 Weakly correlated
22 ZNF554 7 99.0 Weakly correlated
23 ZNF589 7 28.9 Moderately correlated
24 ZNF610 7 28.9 Moderately correlated
25 ZNF394 6 99.0 Weakly correlated
26 ZNF669 6 43.0 Highly correlated
27 ZNF141 6 43.0 Highly correlated
28 ZNF558 5 99.0 Weakly correlated
29 ZIM3 5 87.0 Weakly correlated
30 ZNF101 4 43.0 Highly correlated
31 ZNF547 4 74.0 Weakly correlated
32 ZNF735 4 28.9 Moderately correlated
33 ZNF816 4 28.9 Moderately correlated
34 ZNF8 4 99.0 Weakly correlated
35 ZNF197 4 99.0 Weakly correlated
36 ZNF705B 3 28.9 Moderately correlated
37 ZNF584 3 99.0 Weakly correlated
38 ZNF705D 3 28.9 Moderately correlated
39 ZNF723 3 15.2 Weakly correlated
40 ZNF780A 3 43.0 Highly correlated
41 ZNF534 3 19.6 Weakly correlated
42 ZNF519 3 19.6 Weakly correlated
43 ZNF92 3 28.9 Moderately correlated
44 ZNF30 3 94.0 Weakly correlated
45 ZNF140 2 99.0 Weakly correlated
46 ZNF274 2 99.0 Weakly correlated
47 ZNF585A 2 99.0 Weakly correlated
48 ZNF718 2 19.6 Weakly correlated
49 ZNF28 2 28.9 Moderately correlated
50 ZNF248 2 99.0 Weakly correlated
51 ZNF182 2 99.0 Weakly correlated
52 ZNF425 2 94.0 Weakly correlated
53 ZNF224 2 69.0 Weakly correlated
54 ZNF441 2 43.0 Highly correlated
55 ZNF44 2 43.0 Highly correlated
56 ZKSCAN8 2 160.0 Weakly correlated
57 ZNF786 1 99.0 Weakly correlated
58 ZNF707 1 74.0 Weakly correlated
59 ZNF701 1 28.9 Moderately correlated
60 ZNF287 1 99.0 Weakly correlated
61 ZNF695 1 28.9 Moderately correlated
62 ZFP57 1 87.0 Weakly correlated
63 ZNF257 1 0.0 Weakly correlated
64 ZNF202 1 160.0 Weakly correlated
65 ZNF251 1 94.0 Weakly correlated
66 ZFP28 1 99.0 Weakly correlated
67 ZNF878 1 43.0 Highly correlated
68 ZNF91 1 6.0 Weakly correlated
69 ZNF468 1 28.9 Moderately correlated
70 ZNF567 1 99.0 Weakly correlated
71 ZNF483 1 99.0 Weakly correlated
72 ZNF490 1 43.0 Highly correlated
73 ZNF133 1 99.0 Weakly correlated
74 ZNF418 1 43.0 Highly correlated
75 ZNF34 1 99.0 Weakly correlated
76 ZNF347 1 43.0 Highly correlated
77 ZNF560 1 43.0 Highly correlated
78 ZNF563 1 28.9 Moderately correlated
79 ZNF684 1 99.0 Weakly correlated
80 ZNF33A 1 99.0 Weakly correlated
81 ZNF585B 1 99.0 Weakly correlated
82 ZNF333 1 99.0 Weakly correlated
83 ZNF331 1 94.0 Weakly correlated
84 ZNF175 1 94.0 Weakly correlated
85 ZIK1 1 87.0 Weakly correlated
86 ZNF679 1 28.9 Moderately correlated
87 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF85 15 28.9 Moderately correlated
2 ZNF595 12 43.0 Highly correlated
3 ZNF43 9 43.0 Highly correlated
4 ZNF141 5 43.0 Highly correlated
5 ZNF479 5 6.4 Weakly correlated
6 ZNF506 4 28.9 Moderately correlated
7 ZNF793 4 99.0 Weakly correlated
8 ZNF680 4 28.9 Moderately correlated
9 ZNF616 3 43.0 Highly correlated
10 ZNF766 3 43.0 Highly correlated
11 ZNF2 3 99.0 Weakly correlated
12 ZNF723 3 15.2 Weakly correlated
13 ZNF589 2 28.9 Moderately correlated
14 ZNF735 2 28.9 Moderately correlated
15 ZIM3 2 87.0 Weakly correlated
16 ZNF320 2 28.9 Moderately correlated
17 ZNF669 2 43.0 Highly correlated
18 ZNF585A 2 99.0 Weakly correlated
19 ZNF786 1 99.0 Weakly correlated
20 ZIK1 1 87.0 Weakly correlated
21 ZKSCAN1 1 160.0 Weakly correlated
22 ZNF534 1 19.6 Weakly correlated
23 ZNF317 1 99.0 Weakly correlated
24 ZNF33A 1 99.0 Weakly correlated
25 ZNF549 1 87.0 Weakly correlated
26 ZNF133 1 99.0 Weakly correlated
27 ZNF44 1 43.0 Highly correlated
28 ZNF197 1 99.0 Weakly correlated
29 ZNF560 1 43.0 Highly correlated
30 ZNF528 1 43.0 Highly correlated
31 ZNF257 1 0.0 Weakly correlated
32 ZNF263 1 180.0 Weakly correlated
33 ZFP57 1 87.0 Weakly correlated
34 ZNF567 1 99.0 Weakly correlated
35 ZNF324 1 99.0 Weakly correlated
36 ZNF468 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF595 43.0 Highly correlated
2 ZNF85 28.9 Moderately correlated