ZRdb KZFP & Repeats
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LTR_LTR24C

  • Name
    LTR24C
  • Repbase
    LTR24C
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000466
Description :

MER4 group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaaataagtaattcaaaatctaagctgttggaactttaaattattttgagccttaaaggaatgtgattatggggcctgagtcacgtgacaggcagctgtaacctaggcagctgtaacctttgtttctctgattatagattangccttcttccttacctacattgttttgtaaaatgttgtaaatgactaaagggcgccagggaagaccccttccctcttcactgttgatcttcattatagattaacttccctcttacctctctcacacaaagacttcatgactatcacattgtcttaagatggaatgttaaatacactcttttaaattggaaaggaaatgaaaacaagctgtaaggaaaagaaaacaagctgtacggaaaagaaaanaaancaaactgtaactaactaattaaattgttgtaactcataaaccagccttgtatagaaaatgttataatcctgctaaatttctttgttttctgcctatataagcaagaccttaacttttaacttcggagcactgaccccatttctctggagtctgtgtttcccggatggccattcccagcttttcgcttgaataaactctttaaaactggattctgatcctttcgattatttcaggttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 13 99.0 Weakly correlated
2 ZNF766 7 43.0 Weakly correlated
3 ZNF680 3 28.9 Weakly correlated
4 ZNF679 3 28.9 Weakly correlated
5 ZNF317 3 99.0 Weakly correlated
6 ZNF101 2 43.0 Weakly correlated
7 ZNF18 2 160.0 Weakly correlated
8 ZNF559 2 74.0 Highly correlated
9 ZNF324 2 99.0 Weakly correlated
10 ZNF610 2 28.9 Weakly correlated
11 ZNF394 2 99.0 Weakly correlated
12 ZNF547 1 74.0 Highly correlated
13 ZNF471 1 94.0 Weakly correlated
14 ZNF558 1 99.0 Weakly correlated
15 ZNF736 1 43.0 Weakly correlated
16 ZNF793 1 99.0 Weakly correlated
17 ZNF92 1 28.9 Weakly correlated
18 ZNF519 1 19.6 Weakly correlated
19 ZNF490 1 43.0 Weakly correlated
20 ZNF479 1 6.4 Weakly correlated
21 ZFP37 1 99.0 Weakly correlated
22 ZNF34 1 99.0 Weakly correlated
23 ZNF2 1 99.0 Weakly correlated
24 ZNF28 1 28.9 Weakly correlated
25 ZNF197 1 99.0 Weakly correlated
26 ZNF182 1 99.0 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
28 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2 99.0 Weakly correlated
2 ZNF680 2 28.9 Weakly correlated
3 ZNF101 1 43.0 Weakly correlated
4 ZNF479 1 6.4 Weakly correlated
5 ZNF471 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats