ZRdb KZFP & Repeats
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LTR_LTR24B

  • Name
    LTR24B
  • Repbase
    LTR24B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000465
Description :

MER4 group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaagaaaataaaatttcaggaccctctaaatttattatgccaagggggaagttaagccctggagactgagtcagtagcatgtttgcaattctgcttcttagattatagattaactctcttcctcattgttcttgttctgtaaatgactaggagagaccagagaccagacctcccncccgntccccttccaatcactgatctttgttatagattaactgcctcctttattgtcctgtacctaactcagaccagatggcgcaaaagaccccatgactgttacatcttcagtgtggaatgttaaatatacctttcccgaaagaaaaagaccacctcgactaatcagatcgttgtaactatgcattaagccttacatagaaagatgttgaaattctgttaagcttccctaaactttgtctatataaacgatcccaaacttctacacttcggaacactgacttccattctttggaatctgtgcttcccgggcggnccgtcctcaaactttgcgcttgaataaactctctttaaactagattctgacccttttgattattttaggttgacagtgctta
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 26 99.0 Weakly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF394 9 99.0 Weakly correlated
4 ZNF263 8 180.0 Weakly correlated
5 ZIM3 6 87.0 Weakly correlated
6 ZNF610 6 28.9 Weakly correlated
7 ZNF2 5 99.0 Weakly correlated
8 ZNF101 4 43.0 Weakly correlated
9 ZNF175 4 94.0 Weakly correlated
10 ZNF18 4 160.0 Weakly correlated
11 ZFP37 3 99.0 Weakly correlated
12 ZNF324 3 99.0 Weakly correlated
13 ZNF75D 3 94.0 Weakly correlated
14 ZKSCAN8 3 160.0 Weakly correlated
15 ZKSCAN1 3 160.0 Weakly correlated
16 ZNF723 2 15.2 Weakly correlated
17 ZNF705B 2 28.9 Weakly correlated
18 ZNF679 2 28.9 Weakly correlated
19 ZNF878 2 43.0 Weakly correlated
20 ZNF585B 2 99.0 Weakly correlated
21 ZFP69B 2 99.0 Weakly correlated
22 ZNF584 2 99.0 Weakly correlated
23 ZNF558 2 99.0 Weakly correlated
24 ZNF534 2 19.6 Weakly correlated
25 ZNF528 2 43.0 Weakly correlated
26 ZNF251 2 94.0 Weakly correlated
27 ZNF695 1 28.9 Weakly correlated
28 ZNF169 1 94.0 Weakly correlated
29 ZNF793 1 99.0 Weakly correlated
30 ZNF792 1 94.0 Weakly correlated
31 ZNF224 1 69.0 Moderately correlated
32 ZNF248 1 99.0 Weakly correlated
33 ZNF705D 1 28.9 Weakly correlated
34 ZNF264 1 99.0 Weakly correlated
35 ZNF701 1 28.9 Weakly correlated
36 ZNF700 1 28.9 Weakly correlated
37 ZNF468 1 28.9 Weakly correlated
38 ZNF682 1 28.9 Weakly correlated
39 ZNF282 1 319.0 Weakly correlated
40 ZNF674 1 99.0 Weakly correlated
41 ZNF287 1 99.0 Weakly correlated
42 ZNF597 1 94.0 Weakly correlated
43 ZNF317 1 99.0 Weakly correlated
44 ZNF430 1 19.6 Weakly correlated
45 ZNF441 1 43.0 Weakly correlated
46 ZNF460 1 74.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 2 15.2 Weakly correlated
2 ZIM3 1 87.0 Weakly correlated
3 ZNF263 1 180.0 Weakly correlated
4 ZNF705D 1 28.9 Weakly correlated
5 ZNF878 1 43.0 Weakly correlated
6 ZNF705B 1 28.9 Weakly correlated
7 ZNF585B 1 99.0 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF792 1 94.0 Weakly correlated
10 ZNF264 1 99.0 Weakly correlated
11 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats