ZRdb KZFP & Repeats
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LTR_LTR24

  • Name
    LTR24
  • Repbase
    LTR24
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000464
Description :

Putative LTR of endogenous retroviruses related to MER4-int, MER41-int,MER57-int, MER65-int group. It is possible to split LTR24 intosubfamilies.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaattaaataattcaaacttaaagctgttggaactttaaattattctgagccttgagaggaatgtggctatgcggcctgagtcacgcggcatgcagctgcaacttctgcctttttttttnnncctgtaaataattaggaaagaccaaacggcgccagagataagaccccctcagatcactacccctcctcacggagtaataaagtaatcttccttggaatgtagcaatctgtaaccaatcaaatcgctgtaacgtatgcactggtcttgtatggaaaatgttgcaatcctgctaaaacttctctgtctctgcctatataagtgaaaccttaacttctccactttggaacgctgaccccattcgtttggagtcngtgtttcccgggtggccatcctcaagctttgcgctcgaataaactctatacttaatcatattttctgaatctcattatttaaggttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 28 43.0 Weakly correlated
2 ZNF382 18 99.0 Weakly correlated
3 ZNF589 13 28.9 Weakly correlated
4 ZNF175 12 94.0 Weakly correlated
5 ZNF584 10 99.0 Weakly correlated
6 ZNF197 9 99.0 Weakly correlated
7 ZNF394 8 99.0 Weakly correlated
8 ZNF101 8 43.0 Weakly correlated
9 ZFP37 7 99.0 Weakly correlated
10 ZNF680 7 28.9 Weakly correlated
11 ZKSCAN8 7 160.0 Weakly correlated
12 ZNF701 5 28.9 Weakly correlated
13 ZKSCAN1 5 160.0 Weakly correlated
14 ZNF317 5 99.0 Weakly correlated
15 ZNF2 4 99.0 Weakly correlated
16 ZNF554 4 99.0 Weakly correlated
17 ZNF479 3 6.4 Weakly correlated
18 ZFP69B 3 99.0 Weakly correlated
19 ZNF610 2 28.9 Weakly correlated
20 ZNF92 2 28.9 Weakly correlated
21 ZNF324 2 99.0 Weakly correlated
22 ZNF221 2 74.0 Highly correlated
23 ZNF274 2 99.0 Weakly correlated
24 ZNF251 2 94.0 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF18 1 160.0 Weakly correlated
27 ZNF84 1 99.0 Weakly correlated
28 ZNF792 1 94.0 Weakly correlated
29 ZNF723 1 15.2 Weakly correlated
30 ZNF705D 1 28.9 Weakly correlated
31 ZNF705B 1 28.9 Weakly correlated
32 ZNF230 1 28.9 Weakly correlated
33 ZNF441 1 43.0 Weakly correlated
34 ZNF263 1 180.0 Weakly correlated
35 ZNF597 1 94.0 Weakly correlated
36 ZNF284 1 43.0 Weakly correlated
37 ZNF558 1 99.0 Weakly correlated
38 ZNF549 1 87.0 Weakly correlated
39 ZNF534 1 19.6 Weakly correlated
40 ZNF429 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 6 28.9 Weakly correlated
2 ZNF197 6 99.0 Weakly correlated
3 ZNF584 6 99.0 Weakly correlated
4 ZNF175 6 94.0 Weakly correlated
5 ZNF766 3 43.0 Weakly correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZFP37 1 99.0 Weakly correlated
8 ZNF534 1 19.6 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZNF554 1 99.0 Weakly correlated
11 ZNF610 1 28.9 Weakly correlated
12 ZNF701 1 28.9 Weakly correlated
13 ZNF680 1 28.9 Weakly correlated
14 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Weakly correlated