ZRdb KZFP & Repeats
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LTR_LTR23

  • Name
    LTR23
  • Repbase
    LTR23
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000462
Description :

Putative LTR of endogenous retroviruses related to MER4-int, MER41-int,MER57-int, MER65-int group. There are a minimum of two subfamilies ofLTR23.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaaagaaaaantagctcagagcagtctgagctatgtgaggtatgcaaaatttatcaggcccagagagacatgagtatgggacttcagtcacgcccctactccccctcgccatgcccgggggcaattgtttaaaggcattttgttcctgactagctgcctcacccattatcttcatgttcctggaatttgtgatacaaagaacaatgtatagccaatcaatagcttatgttattttaatgtaaattcttggtaaacaacttanggaactgcctcttctttttttcctttaaaaaccacttgtaactgctgctaatcggagcgtatattcagggcaacttgaatctatgctcccgggttgcagtcctcaagcttggcccaaataaactctctacttatattaattttgcctcagcttcttccttttaggtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 37 43.0 Weakly correlated
2 ZNF382 31 99.0 Weakly correlated
3 ZNF589 16 28.9 Weakly correlated
4 ZNF394 15 99.0 Weakly correlated
5 ZNF175 14 94.0 Weakly correlated
6 ZNF263 11 180.0 Weakly correlated
7 ZNF197 11 99.0 Weakly correlated
8 ZKSCAN8 10 160.0 Weakly correlated
9 ZNF680 9 28.9 Weakly correlated
10 ZKSCAN1 8 160.0 Weakly correlated
11 ZNF679 7 28.9 Weakly correlated
12 ZNF584 7 99.0 Weakly correlated
13 ZNF92 6 28.9 Weakly correlated
14 ZFP37 5 99.0 Weakly correlated
15 ZNF701 4 28.9 Weakly correlated
16 ZNF597 4 94.0 Weakly correlated
17 ZNF317 4 99.0 Weakly correlated
18 ZNF182 4 99.0 Weakly correlated
19 ZNF18 3 160.0 Weakly correlated
20 ZNF140 3 99.0 Weakly correlated
21 ZNF558 3 99.0 Weakly correlated
22 ZNF554 3 99.0 Weakly correlated
23 ZNF534 3 19.6 Weakly correlated
24 ZNF75D 3 94.0 Weakly correlated
25 ZNF101 3 43.0 Weakly correlated
26 ZNF2 3 99.0 Weakly correlated
27 ZNF28 3 28.9 Weakly correlated
28 ZNF284 3 43.0 Weakly correlated
29 ZNF331 2 94.0 Weakly correlated
30 ZNF274 2 99.0 Weakly correlated
31 ZNF510 2 99.0 Weakly correlated
32 ZNF287 2 99.0 Weakly correlated
33 ZNF705B 2 28.9 Weakly correlated
34 ZNF845 2 28.9 Weakly correlated
35 ZNF282 2 319.0 Weakly correlated
36 ZNF677 1 99.0 Weakly correlated
37 ZNF8 1 99.0 Weakly correlated
38 ZNF674 1 99.0 Weakly correlated
39 ZNF879 1 99.0 Weakly correlated
40 ZNF84 1 99.0 Weakly correlated
41 ZNF723 1 15.2 Weakly correlated
42 ZNF735 1 28.9 Weakly correlated
43 ZNF813 1 28.9 Weakly correlated
44 ZNF792 1 94.0 Weakly correlated
45 ZNF780A 1 43.0 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF441 1 43.0 Weakly correlated
48 ZFP69B 1 99.0 Weakly correlated
49 ZIM3 1 87.0 Weakly correlated
50 ZNF133 1 99.0 Weakly correlated
51 ZNF135 1 94.0 Weakly correlated
52 ZNF141 1 43.0 Weakly correlated
53 ZNF251 1 94.0 Weakly correlated
54 ZNF257 1 0.0 Weakly correlated
55 ZNF33B 1 99.0 Weakly correlated
56 ZNF440 1 28.9 Weakly correlated
57 ZNF671 1 94.0 Weakly correlated
58 ZNF460 1 74.0 Highly correlated
59 ZNF490 1 43.0 Weakly correlated
60 ZNF577 1 94.0 Weakly correlated
61 ZNF585A 1 99.0 Weakly correlated
62 ZNF607 1 43.0 Weakly correlated
63 ZNF616 1 43.0 Weakly correlated
64 ZNF641 1 99.0 Weakly correlated
65 ZNF669 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 3 99.0 Weakly correlated
2 ZNF140 2 99.0 Weakly correlated
3 ZNF263 2 180.0 Weakly correlated
4 ZNF589 1 28.9 Weakly correlated
5 ZNF879 1 99.0 Weakly correlated
6 ZNF257 1 0.0 Weakly correlated
7 ZNF28 1 28.9 Weakly correlated
8 ZNF680 1 28.9 Weakly correlated
9 ZNF554 1 99.0 Weakly correlated
10 ZNF679 1 28.9 Weakly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF347 1 43.0 Weakly correlated
13 ZFP37 1 99.0 Weakly correlated
14 ZNF287 1 99.0 Weakly correlated
15 ZNF282 1 319.0 Weakly correlated
16 ZNF141 1 43.0 Weakly correlated
17 ZNF133 1 99.0 Weakly correlated
18 ZNF101 1 43.0 Weakly correlated
19 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats