ZRdb KZFP & Repeats
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LTR_LTR22B

  • Name
    LTR22B
  • Repbase
    LTR22B
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000455
Description :

6bp duplications
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggggttcagtcaggctggtgggaaaaatattagagatagttatagaaatagacacaaaccctcttggaaggccngggagtttgcataacttcggtaatagatctggctgaaggcggcctggtccctttacctttagttaaataaattaaagtagnaacaaaggaatgcggagnagtttatctagctagcttgtttactcatgtggtcctaagactaacctttgatntaccgcgggtgcttaattgctttctactcgggaagtccacaatgtcaattaccctctagtggtgttgactcaagcctttgtcaattaatctttactgaataaatgcgagtctcactggctggtcggcaactgtttacagcactctgcngggagtctgtaagcggcccggacgctcagctggactggcaaagcagaatatctgtgtgtcagtgtactttattcatccgtcgctgggtcagggtctgcgggacagacccccgca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF253 28 19.6 Moderately correlated
2 ZNF486 11 8.6 Weakly correlated
3 ZNF382 7 99.0 Weakly correlated
4 ZNF394 7 99.0 Weakly correlated
5 ZNF91 5 6.0 Weakly correlated
6 ZNF792 4 94.0 Weakly correlated
7 ZNF554 4 99.0 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF101 3 43.0 Weakly correlated
10 ZNF2 3 99.0 Weakly correlated
11 ZNF324 3 99.0 Weakly correlated
12 ZNF479 2 6.4 Weakly correlated
13 ZNF701 2 28.9 Highly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZNF18 2 160.0 Weakly correlated
16 ZIM3 2 87.0 Weakly correlated
17 ZFP69B 2 99.0 Weakly correlated
18 ZFP57 2 87.0 Weakly correlated
19 ZNF425 1 94.0 Weakly correlated
20 ZNF317 1 99.0 Weakly correlated
21 ZNF528 1 43.0 Weakly correlated
22 ZNF534 1 19.6 Moderately correlated
23 ZNF547 1 74.0 Weakly correlated
24 ZNF12 1 99.0 Weakly correlated
25 ZNF558 1 99.0 Weakly correlated
26 ZNF585A 1 99.0 Weakly correlated
27 ZNF679 1 28.9 Highly correlated
28 ZNF75A 1 94.0 Weakly correlated
29 ZNF778 1 74.0 Weakly correlated
30 ZNF823 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF253 27 19.6 Moderately correlated
2 ZNF701 2 28.9 Highly correlated
3 ZFP57 1 87.0 Weakly correlated
4 ZNF12 1 99.0 Weakly correlated
5 ZNF585A 1 99.0 Weakly correlated
6 ZNF101 1 43.0 Weakly correlated
7 ZNF792 1 94.0 Weakly correlated
8 ZNF2 1 99.0 Weakly correlated
9 ZNF324 1 99.0 Weakly correlated
10 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats