ZRdb KZFP & Repeats
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LTR_LTR22A

  • Name
    LTR22A
  • Repbase
    LTR22A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000454
Description :

Putative LTR of HERVK22-related endogenous retrovirus. Solo LTRs areflanked by 6 bp long target site duplications.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggggatcggtcagagtggtgggagaaactatagggaaaggacgcagaccttctgaaaggtcggaaggctctgcagagccccgggggagaatagctgaaggcagctgttctataaccctgaggcagagggcaaggagtaggtacaagggagtgtgggggaatttatcttaaacaggcttgtttacttatgttgaccaggaactgacctttgatcatccgcgcgcgtgacgttccctgaaaggggaacaataaatgttaattacctacaggttgtgttggctccaggctttcggcattgtgcctgcactgaataaaagcaagcagctccagcttctcggggctgctctctggccactagagccaggcagtcncctagctgctcttacactgcatacctgtgtctgagtactcatttcatccgtcggtcggccagggtctgcgggacagacccggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF91 73 6.0 Weakly correlated
2 ZNF254 14 43.0 Highly correlated
3 ZNF382 14 99.0 Weakly correlated
4 ZNF597 4 94.0 Weakly correlated
5 ZNF394 4 99.0 Weakly correlated
6 ZNF549 4 87.0 Weakly correlated
7 ZNF264 3 99.0 Weakly correlated
8 ZNF701 3 28.9 Moderately correlated
9 ZNF317 3 99.0 Weakly correlated
10 ZNF573 3 94.0 Weakly correlated
11 ZNF554 3 99.0 Weakly correlated
12 ZNF680 3 28.9 Moderately correlated
13 ZNF75D 2 94.0 Weakly correlated
14 ZNF766 2 43.0 Highly correlated
15 ZNF793 2 99.0 Weakly correlated
16 ZNF679 2 28.9 Moderately correlated
17 ZNF528 2 43.0 Highly correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZNF343 2 74.0 Weakly correlated
20 ZNF324 2 99.0 Weakly correlated
21 ZNF251 2 94.0 Weakly correlated
22 ZNF723 2 15.2 Weakly correlated
23 ZNF81 1 99.0 Weakly correlated
24 ZNF816 1 28.9 Moderately correlated
25 ZNF92 1 28.9 Moderately correlated
26 ZNF8 1 99.0 Weakly correlated
27 ZFP37 1 99.0 Weakly correlated
28 ZNF674 1 99.0 Weakly correlated
29 ZNF610 1 28.9 Moderately correlated
30 ZNF557 1 15.2 Weakly correlated
31 ZNF547 1 74.0 Weakly correlated
32 ZNF480 1 43.0 Highly correlated
33 ZNF28 1 28.9 Moderately correlated
34 ZNF263 1 180.0 Weakly correlated
35 ZNF182 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 3 87.0 Weakly correlated
2 ZNF343 2 74.0 Weakly correlated
3 ZNF573 2 94.0 Weakly correlated
4 ZNF701 1 28.9 Moderately correlated
5 ZNF680 1 28.9 Moderately correlated
6 ZNF75D 1 94.0 Weakly correlated
7 ZNF816 1 28.9 Moderately correlated
8 ZNF264 1 99.0 Weakly correlated
9 ZNF793 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats