ZRdb KZFP & Repeats
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LTR_LTR21A

  • Name
    LTR21A
  • Repbase
    LTR21A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000450
Description :

Putative LTR of an endogenous retrovirus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagggacaaactgccccaagaaagcttcttggtgctgcccacccctccccgctctgcaancctctccgtgccgcccacccttcccccaagcctctttacatttctaagcccttatctaggcgccgcggtgaagccagcagacttcacttatcaggccttgctgcgataaagcaaaccccaattacaaaccatccggaccgcacagggggaggtcgtgggaagcataaacaaactttacctacaccctcctgtaccataaacgtcacaaggtgatatgtggcaaaattaaccagcaaacaaccccggggtgcggccataccaaagaactccctcaaactcccttccccaatataaacccctcattctgtaagctcggggctgcctcctctgtctgtnangggggcagccggcaggttaataaaggcttgctcgcctgactttgggtctctctttgtcctttctctcggctgaccttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 34 43.0 Weakly correlated
2 ZNF175 21 94.0 Weakly correlated
3 ZNF382 19 99.0 Weakly correlated
4 ZNF589 18 28.9 Highly correlated
5 ZNF197 17 99.0 Weakly correlated
6 ZKSCAN1 17 160.0 Weakly correlated
7 ZNF584 16 99.0 Weakly correlated
8 ZNF534 15 19.6 Moderately correlated
9 ZKSCAN8 14 160.0 Weakly correlated
10 ZNF18 9 160.0 Weakly correlated
11 ZNF486 8 8.6 Weakly correlated
12 ZNF394 7 99.0 Weakly correlated
13 ZFP37 6 99.0 Weakly correlated
14 ZNF274 6 99.0 Weakly correlated
15 ZNF324 6 99.0 Weakly correlated
16 ZNF610 6 28.9 Highly correlated
17 ZNF682 4 28.9 Highly correlated
18 ZNF558 4 99.0 Weakly correlated
19 ZNF2 3 99.0 Weakly correlated
20 ZNF28 3 28.9 Highly correlated
21 ZNF705B 3 28.9 Highly correlated
22 ZNF263 3 180.0 Weakly correlated
23 ZNF597 2 94.0 Weakly correlated
24 ZFP69B 2 99.0 Weakly correlated
25 ZNF695 2 28.9 Highly correlated
26 ZNF705D 2 28.9 Highly correlated
27 ZNF792 2 94.0 Weakly correlated
28 ZNF793 2 99.0 Weakly correlated
29 ZNF778 1 74.0 Weakly correlated
30 ZNF616 1 43.0 Weakly correlated
31 ZNF93 1 8.6 Weakly correlated
32 ZNF585A 1 99.0 Weakly correlated
33 ZNF530 1 28.9 Highly correlated
34 ZNF490 1 43.0 Weakly correlated
35 ZNF468 1 28.9 Highly correlated
36 ZNF441 1 43.0 Weakly correlated
37 ZNF343 1 74.0 Weakly correlated
38 ZNF337 1 43.0 Weakly correlated
39 ZNF257 1 0.0 Weakly correlated
40 ZNF133 1 99.0 Weakly correlated
41 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 12 19.6 Moderately correlated
2 ZNF589 9 28.9 Highly correlated
3 ZNF175 9 94.0 Weakly correlated
4 ZNF197 9 99.0 Weakly correlated
5 ZNF584 8 99.0 Weakly correlated
6 ZNF324 3 99.0 Weakly correlated
7 ZNF382 3 99.0 Weakly correlated
8 ZKSCAN8 1 160.0 Weakly correlated
9 ZKSCAN1 1 160.0 Weakly correlated
10 ZNF585A 1 99.0 Weakly correlated
11 ZNF766 1 43.0 Weakly correlated
12 ZNF530 1 28.9 Highly correlated
13 ZNF468 1 28.9 Highly correlated
14 ZNF610 1 28.9 Highly correlated
15 ZNF28 1 28.9 Highly correlated
16 ZNF101 1 43.0 Weakly correlated
17 ZNF486 1 8.6 Weakly correlated
18 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Highly correlated