ZRdb KZFP & Repeats
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LTR_LTR2

  • Name
    LTR2
  • Repbase
    HARLEQUINLTR
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000449
Description :

Harlequin LTR. Active around the Cercopithecoid-Hominoid speciation.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
taagggaggagaccacccctcatattgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcagacagcccggcgccacaccctgggcctggtagttaaagatcgacccctgacctaatcggttatgttatctatagattacagacattgtatagaaaagcactgtgaaaatccctgtcctgttctgttccgttctaattaccggtgcatgcagcccccagtcacgtaccccctgcttgctcaatcgatcacgaccctctcacgcggacccccttagagttgtgagcccttaaaagggacaggaattgctcactcggggagctcggttcttggagacgtgagtcttgccgangctcccggccgaataaagcccttccttctttaactcggtgtctgaggggttttgtctgcggctcgtcctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 84 43.0 Weakly correlated
2 ZNF813 67 28.9 Highly correlated
3 ZNF317 47 99.0 Weakly correlated
4 ZNF274 43 99.0 Weakly correlated
5 ZNF589 39 28.9 Highly correlated
6 ZNF197 37 99.0 Weakly correlated
7 ZNF175 30 94.0 Weakly correlated
8 ZKSCAN8 26 160.0 Weakly correlated
9 ZNF584 24 99.0 Weakly correlated
10 ZNF382 19 99.0 Weakly correlated
11 ZKSCAN1 16 160.0 Weakly correlated
12 ZNF124 12 43.0 Weakly correlated
13 ZNF534 12 19.6 Moderately correlated
14 ZNF479 11 6.4 Weakly correlated
15 ZNF18 11 160.0 Weakly correlated
16 ZFP37 9 99.0 Weakly correlated
17 ZNF679 9 28.9 Highly correlated
18 ZNF597 8 94.0 Weakly correlated
19 ZNF394 8 99.0 Weakly correlated
20 ZNF506 8 28.9 Highly correlated
21 ZNF263 7 180.0 Weakly correlated
22 ZNF2 7 99.0 Weakly correlated
23 ZNF528 7 43.0 Weakly correlated
24 ZNF680 7 28.9 Highly correlated
25 ZNF558 6 99.0 Weakly correlated
26 ZNF707 6 74.0 Weakly correlated
27 ZNF485 5 94.0 Weakly correlated
28 ZNF468 5 28.9 Highly correlated
29 ZNF701 4 28.9 Highly correlated
30 ZNF257 4 0.0 Weakly correlated
31 ZNF486 3 8.6 Weakly correlated
32 ZNF140 3 99.0 Weakly correlated
33 ZNF682 3 28.9 Highly correlated
34 ZFP69B 3 99.0 Weakly correlated
35 ZNF793 3 99.0 Weakly correlated
36 ZNF705B 3 28.9 Highly correlated
37 ZNF547 3 74.0 Weakly correlated
38 ZNF554 3 99.0 Weakly correlated
39 ZNF705D 3 28.9 Highly correlated
40 ZNF567 3 99.0 Weakly correlated
41 ZNF610 2 28.9 Highly correlated
42 ZNF101 2 43.0 Weakly correlated
43 ZNF735 2 28.9 Highly correlated
44 ZNF549 2 87.0 Weakly correlated
45 ZNF273 2 28.9 Highly correlated
46 ZNF695 2 28.9 Highly correlated
47 ZNF700 2 28.9 Highly correlated
48 ZNF891 1 99.0 Weakly correlated
49 ZNF84 1 99.0 Weakly correlated
50 ZNF85 1 28.9 Highly correlated
51 ZNF93 1 8.6 Weakly correlated
52 ZNF792 1 94.0 Weakly correlated
53 ZNF778 1 74.0 Weakly correlated
54 ZNF786 1 99.0 Weakly correlated
55 ZNF780A 1 43.0 Weakly correlated
56 ZNF641 1 99.0 Weakly correlated
57 ZNF585B 1 99.0 Weakly correlated
58 ZNF573 1 94.0 Weakly correlated
59 ZNF563 1 28.9 Highly correlated
60 ZNF559 1 74.0 Weakly correlated
61 ZNF519 1 19.6 Moderately correlated
62 ZNF510 1 99.0 Weakly correlated
63 ZNF44 1 43.0 Weakly correlated
64 ZNF431 1 28.9 Highly correlated
65 ZNF347 1 43.0 Weakly correlated
66 ZNF324 1 99.0 Weakly correlated
67 ZNF284 1 43.0 Weakly correlated
68 ZNF248 1 99.0 Weakly correlated
69 ZNF17 1 69.0 Weakly correlated
70 ZIM3 1 87.0 Weakly correlated
71 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 17 99.0 Weakly correlated
2 ZNF584 10 99.0 Weakly correlated
3 ZNF766 9 43.0 Weakly correlated
4 ZNF317 7 99.0 Weakly correlated
5 ZNF124 5 43.0 Weakly correlated
6 ZNF534 5 19.6 Moderately correlated
7 ZNF485 5 94.0 Weakly correlated
8 ZNF707 3 74.0 Weakly correlated
9 ZNF813 3 28.9 Highly correlated
10 ZNF506 3 28.9 Highly correlated
11 ZNF468 2 28.9 Highly correlated
12 ZKSCAN8 2 160.0 Weakly correlated
13 ZNF528 2 43.0 Weakly correlated
14 ZNF735 1 28.9 Highly correlated
15 ZNF382 1 99.0 Weakly correlated
16 ZNF679 1 28.9 Highly correlated
17 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF197 99.0 Weakly correlated
2 ZNF584 99.0 Weakly correlated
3 ZNF766 43.0 Weakly correlated