ZRdb KZFP & Repeats
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LTR_LTR1F1

  • Name
    LTR1F1
  • Repbase
    LTR1F1
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000447
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacggacaggagacagggaaatactgggtagaagagggcggttccccggcaaaggccccaccctcaagcctggaaacccgcggccctaaatgggaacaggcattcctgttttcgcgcccaaatgttgccttttggcccgccacgcccccctatcctgtacccatataaaccccaaaccccaggctccacgagcagacgagcagaagagcagaagagcggcagagcggcgcggcagagaaggagagaagagaaggagcgtctgaacgtcgagaggagttcggctggggacggtcggagaggagatcggccgcgggacggccgaactccaggggaagatcatcttcccactccatcccctttccagctccccatccatcccgctgagagccacctccatcacncaataaaacccccgcattcaccatccttcaagtccgtgtgacctgattcttcctggacgccggacaagaacccgggtaccaagagggcactgagctggttaacacttaagccgtctgcggacggcagagctaaaagagcactagttgtaacacacccctagacgctaccgtggggccggagcccaaaagcgctcgccccggctcctgcacctgcccgtctgcgtgctccccctcccgtaaggggtttgagcgcgcggcggccgaacagacgagccacacccctgtcgcacgtcctgcgagggggtcagggaactctcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 140 43.0 Highly correlated
2 ZNF680 104 28.9 Moderately correlated
3 ZNF263 12 180.0 Weakly correlated
4 ZNF382 11 99.0 Weakly correlated
5 ZNF28 4 28.9 Moderately correlated
6 ZNF534 3 19.6 Weakly correlated
7 ZNF479 3 6.4 Weakly correlated
8 ZNF793 2 99.0 Weakly correlated
9 ZNF585B 2 99.0 Weakly correlated
10 ZNF723 2 15.2 Weakly correlated
11 ZNF468 2 28.9 Moderately correlated
12 ZNF75D 2 94.0 Weakly correlated
13 ZNF766 2 43.0 Highly correlated
14 ZNF251 2 94.0 Weakly correlated
15 ZNF707 1 74.0 Weakly correlated
16 ZNF700 1 28.9 Moderately correlated
17 ZNF547 1 74.0 Weakly correlated
18 ZNF674 1 99.0 Weakly correlated
19 ZNF669 1 43.0 Highly correlated
20 ZNF573 1 94.0 Weakly correlated
21 ZNF560 1 43.0 Highly correlated
22 ZFP57 1 87.0 Weakly correlated
23 ZNF483 1 99.0 Weakly correlated
24 ZNF337 1 43.0 Highly correlated
25 ZNF317 1 99.0 Weakly correlated
26 ZNF141 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 137 43.0 Highly correlated
2 ZNF680 43 28.9 Moderately correlated
3 ZNF263 4 180.0 Weakly correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF468 2 28.9 Moderately correlated
6 ZNF793 2 99.0 Weakly correlated
7 ZNF534 2 19.6 Weakly correlated
8 ZNF141 1 43.0 Highly correlated
9 ZNF251 1 94.0 Weakly correlated
10 ZNF723 1 15.2 Weakly correlated
11 ZNF28 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated
2 ZNF680 28.9 Moderately correlated