ZRdb KZFP & Repeats
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LTR_LTR1E

  • Name
    LTR1E
  • Repbase
    LTR1E
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000445
Description :

Oldest among primate LTR1s so far (or perhaps most heterogeneous).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacggacaggaggcagggaaatactgggtagaagagggcggggtccctggcgagggccccaccctcaagcctggacccgcggcccaaagtgagaacatgcattcctgttttcccgcccgaatgttgccttttccaaaaccaccctggcccgccccgccccccatcctgtacccataaaaaccccaggctccactggcagaggagcagagcggngcggcagagaaggagagaagagaagaagcagccggacgtcggagagaagcagcttgacttcagagggacggcttgacggcgggacttcggagaagagttcggccggggacggccgaactccaggggaagaccaccttcccactccatcccctttccagctccccatcccgctgagagccacttccaccgctcaataaaatcctccgcattcaccacccttcaattcgttcgtgcgacctgattcttcctggacgccggacaagaactcgggtgcgggtgcaaaaggctgtcacactgaccctccactgagctgttnaacacttaagccgtccgcggacggcaaagctaaaagagcacactgtaacacacgccctctggggctccgggggtcgcgggcaccccctagacgctgccgcggggccgcacggagttctgctcctgccggcgcccagaagcgctcgtcccggcccctgcacccgctcacctgcgtgctccccctcccgcgaggggttgagagctgcgggctgagtaaacgagccanccccttcgcgagtcccgcgaaggggtcaagggaactatcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 220 43.0 Highly correlated
2 ZNF680 186 28.9 Moderately correlated
3 ZNF92 10 28.9 Moderately correlated
4 ZNF736 7 43.0 Highly correlated
5 ZNF382 6 99.0 Weakly correlated
6 ZNF506 6 28.9 Moderately correlated
7 ZNF263 5 180.0 Weakly correlated
8 ZNF479 5 6.4 Weakly correlated
9 ZNF2 4 99.0 Weakly correlated
10 ZNF679 4 28.9 Moderately correlated
11 ZNF705B 3 28.9 Moderately correlated
12 ZNF274 3 99.0 Weakly correlated
13 ZNF282 3 319.0 Weakly correlated
14 ZNF394 3 99.0 Weakly correlated
15 ZNF723 2 15.2 Weakly correlated
16 ZNF547 2 74.0 Weakly correlated
17 ZNF18 2 160.0 Weakly correlated
18 ZNF468 2 28.9 Moderately correlated
19 ZNF224 2 69.0 Weakly correlated
20 ZNF320 2 28.9 Moderately correlated
21 ZNF317 2 99.0 Weakly correlated
22 ZIM3 1 87.0 Weakly correlated
23 ZNF793 1 99.0 Weakly correlated
24 ZNF735 1 28.9 Moderately correlated
25 ZNF257 1 0.0 Weakly correlated
26 ZNF707 1 74.0 Weakly correlated
27 ZNF705D 1 28.9 Moderately correlated
28 ZNF273 1 28.9 Moderately correlated
29 ZNF695 1 28.9 Moderately correlated
30 ZNF28 1 28.9 Moderately correlated
31 ZNF597 1 94.0 Weakly correlated
32 ZNF563 1 28.9 Moderately correlated
33 ZNF554 1 99.0 Weakly correlated
34 ZNF534 1 19.6 Weakly correlated
35 ZNF519 1 19.6 Weakly correlated
36 ZNF425 1 94.0 Weakly correlated
37 ZNF490 1 43.0 Highly correlated
38 ZNF440 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 214 43.0 Highly correlated
2 ZNF680 75 28.9 Moderately correlated
3 ZNF736 6 43.0 Highly correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF468 2 28.9 Moderately correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF793 1 99.0 Weakly correlated
8 ZNF282 1 319.0 Weakly correlated
9 ZNF735 1 28.9 Moderately correlated
10 ZNF320 1 28.9 Moderately correlated
11 ZNF28 1 28.9 Moderately correlated
12 ZNF534 1 19.6 Weakly correlated
13 ZNF707 1 74.0 Weakly correlated
14 ZNF317 1 99.0 Weakly correlated
15 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated