ZRdb KZFP & Repeats
...

LTR_LTR1D

  • Name
    LTR1D
  • Repbase
    LTR1D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000443
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagggacaggaggcagagaaattctaggcagaaaagggcgggtccccggcgaaaccccaccctcaagccgaaaagcctgaaaccgcggcccaaagtgagaacttatatccctgttttcccgctcgaatgttgccttttcctaaaccacccatggcccgccccgccccccatcctgtgcctataaagaccccagactcagccggcagagaggagaagcagctggacgtcggagactacggctggacgtcggagagaagcggcttgacttcagagggacagcttgacggcgtaacttcggagaagaatccggccggagacggccggacttcaggggaagattacctncccgccccgtccccttttcagctccccttcccgctgagagccactttcatcggcaataaaatcccccgcatttaccatccttcaattcgttcgtgcgacctcatttttcctggacgccggacaagagctcgggagccacgagtgcggatacaaaaggctgtcacactggccctttgccctcgctggcggagggcagccgcctcacgcgaaaaggcagagggcccactgagctgttaacacttaagccgtccgcggacggcagagctaaaagagcactgtaacacgccctctggggcttcgggggtcgcaggcacccccgcctggatgctgccgcggggcccgcacggagttcgctcctgccggcgcccaaaagcgctcgccccggctcctgcacccgctcacctgcgcgctccctcccgcgaggggtggaacgcagcgggtccgagtgagtggagttcgctcctgccggcgccgaagcggccggctggttccagcgctcgtgcactccagttcccgcctcgttcgctcgcgcgctccctcccgcgaggagttgagagcggcgggctgagtaaacgaggcacccctgtcgcgagtcccgcgaaggggtcagggaaatatcctgcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 135 43.0 Highly correlated
2 ZNF736 88 43.0 Highly correlated
3 ZNF680 47 28.9 Moderately correlated
4 ZNF382 29 99.0 Weakly correlated
5 ZNF263 19 180.0 Weakly correlated
6 ZNF28 11 28.9 Moderately correlated
7 ZNF274 10 99.0 Weakly correlated
8 ZNF317 7 99.0 Weakly correlated
9 ZNF705B 7 28.9 Moderately correlated
10 ZNF429 4 28.9 Moderately correlated
11 ZNF679 4 28.9 Moderately correlated
12 ZFP57 3 87.0 Weakly correlated
13 ZNF547 3 74.0 Weakly correlated
14 ZNF394 3 99.0 Weakly correlated
15 ZNF705D 3 28.9 Moderately correlated
16 ZNF114 3 28.9 Moderately correlated
17 ZNF92 3 28.9 Moderately correlated
18 ZNF701 2 28.9 Moderately correlated
19 ZNF735 2 28.9 Moderately correlated
20 ZNF75D 2 94.0 Weakly correlated
21 ZNF554 2 99.0 Weakly correlated
22 ZNF766 2 43.0 Highly correlated
23 ZNF793 2 99.0 Weakly correlated
24 ZFP69B 2 99.0 Weakly correlated
25 ZNF534 2 19.6 Weakly correlated
26 ZNF528 2 43.0 Highly correlated
27 ZNF519 2 19.6 Weakly correlated
28 ZNF273 2 28.9 Moderately correlated
29 ZNF251 2 94.0 Weakly correlated
30 ZNF2 2 99.0 Weakly correlated
31 ZNF101 2 43.0 Highly correlated
32 ZNF141 2 43.0 Highly correlated
33 ZNF18 2 160.0 Weakly correlated
34 ZNF189 2 99.0 Weakly correlated
35 ZNF761 1 19.6 Weakly correlated
36 ZNF723 1 15.2 Weakly correlated
37 ZNF224 1 69.0 Weakly correlated
38 ZNF747 1 43.0 Highly correlated
39 ZNF93 1 8.6 Weakly correlated
40 ZNF786 1 99.0 Weakly correlated
41 ZNF792 1 94.0 Weakly correlated
42 ZNF84 1 99.0 Weakly correlated
43 ZKSCAN5 1 160.0 Weakly correlated
44 ZNF506 1 28.9 Moderately correlated
45 ZNF257 1 0.0 Weakly correlated
46 ZNF287 1 99.0 Weakly correlated
47 ZNF675 1 8.6 Weakly correlated
48 ZNF671 1 94.0 Weakly correlated
49 ZNF611 1 19.6 Weakly correlated
50 ZNF605 1 99.0 Weakly correlated
51 ZNF589 1 28.9 Moderately correlated
52 ZNF585A 1 99.0 Weakly correlated
53 ZNF320 1 28.9 Moderately correlated
54 ZNF549 1 87.0 Weakly correlated
55 ZNF441 1 43.0 Highly correlated
56 ZNF479 1 6.4 Weakly correlated
57 ZNF483 1 99.0 Weakly correlated
58 ZNF486 1 8.6 Weakly correlated
59 ZNF510 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 133 43.0 Highly correlated
2 ZNF736 87 43.0 Highly correlated
3 ZNF680 17 28.9 Moderately correlated
4 ZNF28 10 28.9 Moderately correlated
5 ZNF263 5 180.0 Weakly correlated
6 ZNF701 2 28.9 Moderately correlated
7 ZNF18 1 160.0 Weakly correlated
8 ZNF75D 1 94.0 Weakly correlated
9 ZNF671 1 94.0 Weakly correlated
10 ZNF549 1 87.0 Weakly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF766 1 43.0 Highly correlated
14 ZFP57 1 87.0 Weakly correlated
15 ZNF585A 1 99.0 Weakly correlated
16 ZNF429 1 28.9 Moderately correlated
17 ZNF2 1 99.0 Weakly correlated
18 ZNF479 1 6.4 Weakly correlated
19 ZNF317 1 99.0 Weakly correlated
20 ZNF189 1 99.0 Weakly correlated
21 ZNF382 1 99.0 Weakly correlated
22 ZNF273 1 28.9 Moderately correlated
23 ZNF141 1 43.0 Highly correlated
24 ZKSCAN5 1 160.0 Weakly correlated
25 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated