ZRdb KZFP & Repeats
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LTR_LTR1B

  • Name
    LTR1B
  • Repbase
    LTR1B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000437
Description :

LTR1B is one of a number of closely related LTR1B variants.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacggacaggagacagggaaatactgggtagaagagggcggttccccggcaaaggccccaccctcaagcctgganacccgcggccctaaatgggaacaggcattcctgttttcgcgcccaaaaagttgccttttggcccgccacgccccctatcctgtacccatataaaccccgaaccccaggctccagaagcagacgagcagacgagnagangagacgaggagacgagcagacgaacggcagaacggcgcggcagagaaagagagaagagaaggagcgtctgaacgccgagaggagttcggctgggggcggtcggagaggagntcggccgctggacggccaaactccaggggaagatcatcttcccactccatcccccttccagctccccatccatcccgctgagagccacctccaccactcaataaaaccccgcattcatccttcaagtccgtgtgtgacccgattcttccgggacgctggacaagagctcgggatacagaaagctgtcacactggccctctgcccttgcgaaaaggcagagggtccactgagctggttaacacttaagccgtccgcggacggcaaggctaaaagagcgcactgtaacacacgcccacttgggcttcgggagtcgcaggcacccacccctagacgctaccgtggggccggagcccaaaagcgctcgccccggctcctgcacctgcccgtctgcgtgctccccctcccgtaaggggtttgagcagcggcggcggccgaacagacgagccacacccctgtcgcacgtcctgcgaggggggtcagggaactctcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 189 43.0 Highly correlated
2 ZNF680 87 28.9 Moderately correlated
3 ZNF75D 27 94.0 Weakly correlated
4 ZNF382 12 99.0 Weakly correlated
5 ZNF479 9 6.4 Weakly correlated
6 ZNF263 8 180.0 Weakly correlated
7 ZNF534 7 19.6 Weakly correlated
8 ZNF92 5 28.9 Moderately correlated
9 ZNF679 5 28.9 Moderately correlated
10 ZNF723 4 15.2 Weakly correlated
11 ZNF793 4 99.0 Weakly correlated
12 ZNF468 4 28.9 Moderately correlated
13 ZNF320 3 28.9 Moderately correlated
14 ZNF585B 3 99.0 Weakly correlated
15 ZIM3 3 87.0 Weakly correlated
16 ZNF823 2 43.0 Highly correlated
17 ZNF483 2 99.0 Weakly correlated
18 ZNF486 2 8.6 Weakly correlated
19 ZFP57 2 87.0 Weakly correlated
20 ZNF485 1 94.0 Weakly correlated
21 ZFP37 1 99.0 Weakly correlated
22 ZNF394 1 99.0 Weakly correlated
23 ZNF28 1 28.9 Moderately correlated
24 ZNF282 1 319.0 Weakly correlated
25 ZNF701 1 28.9 Moderately correlated
26 ZNF705B 1 28.9 Moderately correlated
27 ZNF705D 1 28.9 Moderately correlated
28 ZNF707 1 74.0 Weakly correlated
29 ZNF274 1 99.0 Weakly correlated
30 ZNF18 1 160.0 Weakly correlated
31 ZNF141 1 43.0 Highly correlated
32 ZNF140 1 99.0 Weakly correlated
33 ZNF878 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 187 43.0 Highly correlated
2 ZNF680 34 28.9 Moderately correlated
3 ZNF75D 13 94.0 Weakly correlated
4 ZNF479 6 6.4 Weakly correlated
5 ZNF263 5 180.0 Weakly correlated
6 ZNF468 4 28.9 Moderately correlated
7 ZNF793 3 99.0 Weakly correlated
8 ZNF534 3 19.6 Weakly correlated
9 ZNF382 2 99.0 Weakly correlated
10 ZFP57 1 87.0 Weakly correlated
11 ZNF320 1 28.9 Moderately correlated
12 ZNF707 1 74.0 Weakly correlated
13 ZNF282 1 319.0 Weakly correlated
14 ZNF823 1 43.0 Highly correlated
15 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF680 28.9 Moderately correlated
4 ZNF75D 94.0 Weakly correlated