ZRdb KZFP & Repeats
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LTR_LTR1A2

  • Name
    LTR1A2
  • Repbase
    LTR1A2
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000436
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacgggagtgctgggaagggaagagcgtggtccctttaaatgatacggaaggggggaagggaagtgctgggtagaggagggcgtggtccctggctagggctccacccccggcctgtgcccacggacctaggtgaggacaggcacttctgccttcccgcccaaatgttgcatttcccaagaccaccctggcccgccacgcccccatcctgtgcctataaaaaccccgagaccctagcaggcagacacacaagcggctggacgtcgagaggagcacatcggcggaagaanacacaagcggctggacgtcgagaggagcacgccgacaggcaccggcacgccggcaggccatcgaccggcggaacgacgcggagtttggccggggcagtcggaggagagccgggccgccgagcggcccgactccaggggaaaaccatctcccttctggctcccccatctgctgagagctacttccactcaataaaaccttgcactcattctccaagcccacgtgtgatccgattcttccggtacaccaaggcaagaacccgggatacagaaagccctctgtccttgcgacaaggtagagggtctaattgagctggttaacacaagccgcctatagacggctaaactaaaagagcaccctgtaacacacgcccactggggcttcaggagctgtaaacattcacccctagacactgccgtggggtcggagccccacagcctgcccgtctgtatgctcccctagaggtttgagcagcggggcactgaagaagcgagccacacccccatcgcacgccctgcgagggggacaagggaacctttcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 75 180.0 Weakly correlated
2 ZNF382 40 99.0 Weakly correlated
3 ZNF347 35 43.0 Highly correlated
4 ZNF766 33 43.0 Highly correlated
5 ZNF680 19 28.9 Moderately correlated
6 ZNF394 18 99.0 Weakly correlated
7 ZNF506 18 28.9 Moderately correlated
8 ZNF18 17 160.0 Weakly correlated
9 ZNF534 17 19.6 Weakly correlated
10 ZKSCAN1 16 160.0 Weakly correlated
11 ZFP57 14 87.0 Weakly correlated
12 ZKSCAN8 14 160.0 Weakly correlated
13 ZNF589 14 28.9 Moderately correlated
14 ZNF793 14 99.0 Weakly correlated
15 ZNF2 11 99.0 Weakly correlated
16 ZFP37 9 99.0 Weakly correlated
17 ZNF175 9 94.0 Weakly correlated
18 ZFP14 8 99.0 Weakly correlated
19 ZFP69B 8 99.0 Weakly correlated
20 ZNF558 8 99.0 Weakly correlated
21 ZNF573 8 94.0 Weakly correlated
22 ZNF695 8 28.9 Moderately correlated
23 ZNF8 8 99.0 Weakly correlated
24 ZIM3 7 87.0 Weakly correlated
25 ZNF197 7 99.0 Weakly correlated
26 ZNF324 7 99.0 Weakly correlated
27 ZNF441 7 43.0 Highly correlated
28 ZNF479 7 6.4 Weakly correlated
29 ZNF189 6 99.0 Weakly correlated
30 ZNF273 6 28.9 Moderately correlated
31 ZNF549 6 87.0 Weakly correlated
32 ZNF671 6 94.0 Weakly correlated
33 ZNF679 6 28.9 Moderately correlated
34 ZNF705B 6 28.9 Moderately correlated
35 ZNF101 5 43.0 Highly correlated
36 ZNF28 5 28.9 Moderately correlated
37 ZNF317 5 99.0 Weakly correlated
38 ZNF547 5 74.0 Weakly correlated
39 ZNF584 5 99.0 Weakly correlated
40 ZNF610 5 28.9 Moderately correlated
41 ZNF133 4 99.0 Weakly correlated
42 ZNF141 4 43.0 Highly correlated
43 ZNF334 4 99.0 Weakly correlated
44 ZNF519 4 19.6 Weakly correlated
45 ZNF705D 4 28.9 Moderately correlated
46 ZNF230 3 28.9 Moderately correlated
47 ZNF251 3 94.0 Weakly correlated
48 ZNF257 3 0.0 Weakly correlated
49 ZNF284 3 43.0 Highly correlated
50 ZNF343 3 74.0 Weakly correlated
51 ZNF528 3 43.0 Highly correlated
52 ZNF585A 3 99.0 Weakly correlated
53 ZNF597 3 94.0 Weakly correlated
54 ZNF701 3 28.9 Moderately correlated
55 ZNF723 3 15.2 Weakly correlated
56 ZNF765 3 8.6 Weakly correlated
57 ZNF792 3 94.0 Weakly correlated
58 ZNF114 2 28.9 Moderately correlated
59 ZNF202 2 160.0 Weakly correlated
60 ZNF320 2 28.9 Moderately correlated
61 ZNF337 2 43.0 Highly correlated
62 ZNF33A 2 99.0 Weakly correlated
63 ZNF418 2 43.0 Highly correlated
64 ZNF41 2 99.0 Weakly correlated
65 ZNF425 2 94.0 Weakly correlated
66 ZNF485 2 94.0 Weakly correlated
67 ZNF557 2 15.2 Weakly correlated
68 ZNF585B 2 99.0 Weakly correlated
69 ZNF605 2 99.0 Weakly correlated
70 ZNF649 2 28.9 Moderately correlated
71 ZNF669 2 43.0 Highly correlated
72 ZNF675 2 8.6 Weakly correlated
73 ZNF682 2 28.9 Moderately correlated
74 ZNF736 2 43.0 Highly correlated
75 ZNF778 2 74.0 Weakly correlated
76 ZKSCAN2 1 180.0 Weakly correlated
77 ZNF12 1 99.0 Weakly correlated
78 ZNF135 1 94.0 Weakly correlated
79 ZNF157 1 99.0 Weakly correlated
80 ZNF180 1 99.0 Weakly correlated
81 ZNF182 1 99.0 Weakly correlated
82 ZNF222 1 43.0 Highly correlated
83 ZNF264 1 99.0 Weakly correlated
84 ZNF26 1 99.0 Weakly correlated
85 ZNF274 1 99.0 Weakly correlated
86 ZNF33B 1 99.0 Weakly correlated
87 ZNF429 1 28.9 Moderately correlated
88 ZNF440 1 28.9 Moderately correlated
89 ZNF443 1 19.6 Weakly correlated
90 ZNF483 1 99.0 Weakly correlated
91 ZNF484 1 99.0 Weakly correlated
92 ZNF486 1 8.6 Weakly correlated
93 ZNF514 1 94.0 Weakly correlated
94 ZNF544 1 0.0 Weakly correlated
95 ZNF548 1 94.0 Weakly correlated
96 ZNF559 1 74.0 Weakly correlated
97 ZNF560 1 43.0 Highly correlated
98 ZNF565 1 99.0 Weakly correlated
99 ZNF596 1 94.0 Weakly correlated
100 ZNF611 1 19.6 Weakly correlated
101 ZNF707 1 74.0 Weakly correlated
102 ZNF709 1 87.0 Weakly correlated
103 ZNF749 1 28.9 Moderately correlated
104 ZNF763 1 15.2 Weakly correlated
105 ZNF780A 1 43.0 Highly correlated
106 ZNF780B 1 74.0 Weakly correlated
107 ZNF786 1 99.0 Weakly correlated
108 ZNF845 1 28.9 Moderately correlated
109 ZNF84 1 99.0 Weakly correlated
110 ZNF850 1 28.9 Moderately correlated
111 ZNF879 1 99.0 Weakly correlated
112 ZNF92 1 28.9 Moderately correlated
113 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 35 43.0 Highly correlated
2 ZNF263 23 180.0 Weakly correlated
3 ZNF534 8 19.6 Weakly correlated
4 ZNF793 6 99.0 Weakly correlated
5 ZNF573 5 94.0 Weakly correlated
6 ZNF549 5 87.0 Weakly correlated
7 ZFP14 5 99.0 Weakly correlated
8 ZNF28 4 28.9 Moderately correlated
9 ZNF680 4 28.9 Moderately correlated
10 ZNF671 3 94.0 Weakly correlated
11 ZNF189 3 99.0 Weakly correlated
12 ZNF2 3 99.0 Weakly correlated
13 ZNF610 2 28.9 Moderately correlated
14 ZNF506 2 28.9 Moderately correlated
15 ZNF257 2 0.0 Weakly correlated
16 ZNF479 2 6.4 Weakly correlated
17 ZNF175 2 94.0 Weakly correlated
18 ZNF766 2 43.0 Highly correlated
19 ZNF528 2 43.0 Highly correlated
20 ZFP57 2 87.0 Weakly correlated
21 ZNF141 2 43.0 Highly correlated
22 ZNF679 2 28.9 Moderately correlated
23 ZNF736 2 43.0 Highly correlated
24 ZNF597 2 94.0 Weakly correlated
25 ZNF418 1 43.0 Highly correlated
26 ZNF675 1 8.6 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
28 ZNF584 1 99.0 Weakly correlated
29 ZNF382 1 99.0 Weakly correlated
30 ZKSCAN8 1 160.0 Weakly correlated
31 ZNF133 1 99.0 Weakly correlated
32 ZNF707 1 74.0 Weakly correlated
33 ZNF334 1 99.0 Weakly correlated
34 ZNF33A 1 99.0 Weakly correlated
35 ZNF320 1 28.9 Moderately correlated
36 ZNF440 1 28.9 Moderately correlated
37 ZNF695 1 28.9 Moderately correlated
38 ZNF589 1 28.9 Moderately correlated
39 ZNF484 1 99.0 Weakly correlated
40 ZNF251 1 94.0 Weakly correlated
41 ZNF343 1 74.0 Weakly correlated
42 ZNF519 1 19.6 Weakly correlated
43 ZNF18 1 160.0 Weakly correlated
44 ZNF780A 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF793 99.0 Weakly correlated