ZRdb KZFP & Repeats
...

LTR_LTR1A1

  • Name
    LTR1A1
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000435
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacgggaggggggcagggaagtgctgggtagagaagggcggggtccctggcgagggctccaccctcgggcctgtgcccacggacctaagtgaggacaggcactcctgttttcgcgcccaaatgttgcattttccaagaccactctggcccgccacgcccccatcctgtgcccataaaaaccccgagaccctagcgggcacacacacaagcggctggacgtcgagaggaacacaccggcagaagaacacaccgacagacaccagcagacgccggcaggccatcgacggcggaacgacgcggaattcggccgggggcggtcggaggagagtccggccgctgggcggcccgactccaggggaagaccaccttcccactccatcccccttctggctccccatccatctgctgagagctacctccaccactcaataaaaccttgcactcatcctccaagcccacgtgtgatccgatttttccggtacactagggcaagaacccgggatacagaaagccctctgtccttgcgataaggcagagggtctaattgagctgattaacacaagccgcctgcggacggcaaagctgaaagagcacactgtaacacacgcccactggggcttcgggagctgtaaacactcaaccctagacgctgccgtggggtcggagcccaaacgctccccacgacctgcccgtctgcatgctccccctaggggtttgagcagcggggcaccgaagaagcgagccacacccccgtcgcacgccctgcgagggggataagggaactcctcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 172 43.0 Highly correlated
2 ZNF534 25 19.6 Weakly correlated
3 ZNF680 18 28.9 Moderately correlated
4 ZNF263 11 180.0 Weakly correlated
5 ZNF382 7 99.0 Weakly correlated
6 ZNF320 7 28.9 Moderately correlated
7 ZNF585B 6 99.0 Weakly correlated
8 ZNF736 6 43.0 Highly correlated
9 ZNF506 6 28.9 Moderately correlated
10 ZNF2 5 99.0 Weakly correlated
11 ZNF141 5 43.0 Highly correlated
12 ZNF528 4 43.0 Highly correlated
13 ZNF282 4 319.0 Weakly correlated
14 ZNF274 4 99.0 Weakly correlated
15 ZIM3 4 87.0 Weakly correlated
16 ZNF793 4 99.0 Weakly correlated
17 ZNF675 3 8.6 Weakly correlated
18 ZNF695 3 28.9 Moderately correlated
19 ZNF202 3 160.0 Weakly correlated
20 ZNF28 3 28.9 Moderately correlated
21 ZNF780B 3 74.0 Weakly correlated
22 ZKSCAN1 3 160.0 Weakly correlated
23 ZNF479 2 6.4 Weakly correlated
24 ZFP57 2 87.0 Weakly correlated
25 ZNF584 2 99.0 Weakly correlated
26 ZNF597 2 94.0 Weakly correlated
27 ZNF669 2 43.0 Highly correlated
28 ZNF674 2 99.0 Weakly correlated
29 ZNF679 2 28.9 Moderately correlated
30 ZNF723 2 15.2 Weakly correlated
31 ZNF766 2 43.0 Highly correlated
32 ZFP37 2 99.0 Weakly correlated
33 ZNF394 2 99.0 Weakly correlated
34 ZNF671 1 94.0 Weakly correlated
35 ZNF92 1 28.9 Moderately correlated
36 ZNF878 1 43.0 Highly correlated
37 ZNF816 1 28.9 Moderately correlated
38 ZNF786 1 99.0 Weakly correlated
39 ZKSCAN8 1 160.0 Weakly correlated
40 ZNF101 1 43.0 Highly correlated
41 ZNF182 1 99.0 Weakly correlated
42 ZNF18 1 160.0 Weakly correlated
43 ZNF701 1 28.9 Moderately correlated
44 ZNF222 1 43.0 Highly correlated
45 ZNF230 1 28.9 Moderately correlated
46 ZNF251 1 94.0 Weakly correlated
47 ZNF257 1 0.0 Weakly correlated
48 ZNF273 1 28.9 Moderately correlated
49 ZNF468 1 28.9 Moderately correlated
50 ZNF317 1 99.0 Weakly correlated
51 ZNF324 1 99.0 Weakly correlated
52 ZNF589 1 28.9 Moderately correlated
53 ZNF586 1 43.0 Highly correlated
54 ZNF334 1 99.0 Weakly correlated
55 ZNF578 1 15.2 Weakly correlated
56 ZNF563 1 28.9 Moderately correlated
57 ZNF560 1 43.0 Highly correlated
58 ZNF559 1 74.0 Weakly correlated
59 ZNF425 1 94.0 Weakly correlated
60 ZNF441 1 43.0 Highly correlated
61 ZNF445 1 99.0 Weakly correlated
62 ZNF483 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 170 43.0 Highly correlated
2 ZNF534 22 19.6 Weakly correlated
3 ZNF736 6 43.0 Highly correlated
4 ZNF793 4 99.0 Weakly correlated
5 ZIM3 3 87.0 Weakly correlated
6 ZNF680 3 28.9 Moderately correlated
7 ZNF141 3 43.0 Highly correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZNF675 2 8.6 Weakly correlated
10 ZNF780B 2 74.0 Weakly correlated
11 ZNF202 2 160.0 Weakly correlated
12 ZNF479 2 6.4 Weakly correlated
13 ZNF2 2 99.0 Weakly correlated
14 ZNF674 2 99.0 Weakly correlated
15 ZNF506 2 28.9 Moderately correlated
16 ZNF585B 2 99.0 Weakly correlated
17 ZNF320 1 28.9 Moderately correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF597 1 94.0 Weakly correlated
20 ZNF679 1 28.9 Moderately correlated
21 ZNF468 1 28.9 Moderately correlated
22 ZNF28 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF347 43.0 Highly correlated