ZRdb KZFP & Repeats
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LTR_LTR19C

  • Name
    LTR19C
  • Repbase
    LTR19C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000433
Description :

At orthologous sites in all simians, absent from tarsier.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttataggagatagaaagaaattatttaggtagacagttagggtaaagngagtccccggcagaaaactttccttctaacaaaaagcagctcagaaatagctccctttctaaccncacgcagttcaaagaaatcacttctcttctaacaaagagcagcctggaagatcaggctgtaaaacacagataagcaactcnggcacagaaggagnggggagtctcctgggtaatcaccaaacttcacacncatacgatgggccccagtaaaaacagtgggccttaataagcacattcctttccctttaggcacactaagatagggaagctggaagcggactggggggggatgcctgcagctgcaagaagatgcctgggaacaggcacggaaactctccctcccagataagcaagacaaagcagcgcggagcagcagactaagagcccgcctgcgtgatcaaggaatggggtgggggctgntagaaaactctgctctatgcagatggcacacctggtcccaaccgaatcttcgggccctangnggataagacaccccctcctcactagccccctcctcactagcccatttataaaaaccctgacatttttactgcagcncggcaacccgttcgggacccctctctgtgacagagagctgttctttcctttcgcctattaaactcctgctccaanctcaccctgtgtgtgtgtgtccgcgncctcgatttccttggccgtgagaccaagaaccttggtatttaccccagacaacgaggctgcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 47 43.0 Highly correlated
2 ZNF680 35 28.9 Moderately correlated
3 ZNF589 31 28.9 Moderately correlated
4 ZKSCAN8 31 160.0 Weakly correlated
5 ZNF584 29 99.0 Weakly correlated
6 ZNF175 29 94.0 Weakly correlated
7 ZNF197 29 99.0 Weakly correlated
8 ZKSCAN1 25 160.0 Weakly correlated
9 ZNF274 16 99.0 Weakly correlated
10 ZNF18 14 160.0 Weakly correlated
11 ZNF681 13 28.9 Moderately correlated
12 ZNF382 13 99.0 Weakly correlated
13 ZNF486 8 8.6 Weakly correlated
14 ZFP37 8 99.0 Weakly correlated
15 ZFP69B 8 99.0 Weakly correlated
16 ZNF2 7 99.0 Weakly correlated
17 ZNF394 7 99.0 Weakly correlated
18 ZNF263 6 180.0 Weakly correlated
19 ZNF282 4 319.0 Weakly correlated
20 ZNF528 4 43.0 Highly correlated
21 ZNF558 3 99.0 Weakly correlated
22 ZNF324 3 99.0 Weakly correlated
23 ZNF101 3 43.0 Highly correlated
24 ZNF705B 3 28.9 Moderately correlated
25 ZNF506 3 28.9 Moderately correlated
26 ZNF610 2 28.9 Moderately correlated
27 ZNF597 2 94.0 Weakly correlated
28 ZNF705D 2 28.9 Moderately correlated
29 ZNF84 2 99.0 Weakly correlated
30 ZNF8 2 99.0 Weakly correlated
31 ZNF695 1 28.9 Moderately correlated
32 ZNF735 1 28.9 Moderately correlated
33 ZNF778 1 74.0 Weakly correlated
34 ZNF677 1 99.0 Weakly correlated
35 ZNF793 1 99.0 Weakly correlated
36 ZNF852 1 94.0 Weakly correlated
37 ZNF468 1 28.9 Moderately correlated
38 ZNF585A 1 99.0 Weakly correlated
39 ZNF549 1 87.0 Weakly correlated
40 ZNF534 1 19.6 Weakly correlated
41 ZNF519 1 19.6 Weakly correlated
42 ZNF44 1 43.0 Highly correlated
43 ZNF445 1 99.0 Weakly correlated
44 ZNF429 1 28.9 Moderately correlated
45 ZNF343 1 74.0 Weakly correlated
46 ZNF317 1 99.0 Weakly correlated
47 ZNF251 1 94.0 Weakly correlated
48 ZNF154 1 94.0 Weakly correlated
49 ZNF141 1 43.0 Highly correlated
50 ZNF133 1 99.0 Weakly correlated
51 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 16 94.0 Weakly correlated
2 ZNF589 15 28.9 Moderately correlated
3 ZNF681 13 28.9 Moderately correlated
4 ZNF584 12 99.0 Weakly correlated
5 ZNF197 12 99.0 Weakly correlated
6 ZNF680 4 28.9 Moderately correlated
7 ZNF766 4 43.0 Highly correlated
8 ZNF18 4 160.0 Weakly correlated
9 ZKSCAN1 3 160.0 Weakly correlated
10 ZKSCAN8 3 160.0 Weakly correlated
11 ZNF528 3 43.0 Highly correlated
12 ZFP69B 3 99.0 Weakly correlated
13 ZNF282 2 319.0 Weakly correlated
14 ZNF274 2 99.0 Weakly correlated
15 ZNF263 2 180.0 Weakly correlated
16 ZNF677 1 99.0 Weakly correlated
17 ZNF84 1 99.0 Weakly correlated
18 ZNF382 1 99.0 Weakly correlated
19 ZNF141 1 43.0 Highly correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF429 1 28.9 Moderately correlated
22 ZNF534 1 19.6 Weakly correlated
23 ZNF558 1 99.0 Weakly correlated
24 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Moderately correlated