ZRdb KZFP & Repeats
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LTR_LTR19A

  • Name
    LTR19A
  • Repbase
    LTR19A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000431
Description :

LTR19 elements are flanked by 5 bp target site duplication.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacagagcaggagcatcgccatcttggacaagcaccgccattttaaagttcnccttgatcaaaaaccgcctaaatccaancccgagggcatcagcctaatggctaaggtcagcatgaccataaaccacaaatgacatctccgaccagaaacattccaaccctaagataaacccctccccgaccagagacatgccagccccgagataacctcccctccggccggagagatgtcagccccaagataacctcccctccgaccagagacattccaaccccgcnataaacttctcccccacacagaaacattccaagcctgtgataangctccctcaccctaaaaccnntaaatactcttagtctgtaagagagagcgctcctgaccgaaatcggccagaagcccctctcaggtttattctccaaaataaacctgtctttgactgttgagccgcttttcgtgtttctttcctctttctttaactcttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF850 84 28.9 Moderately correlated
2 ZNF92 76 28.9 Moderately correlated
3 ZNF766 63 43.0 Highly correlated
4 ZNF382 42 99.0 Weakly correlated
5 ZNF680 25 28.9 Moderately correlated
6 ZNF197 16 99.0 Weakly correlated
7 ZNF589 15 28.9 Moderately correlated
8 ZNF324 14 99.0 Weakly correlated
9 ZKSCAN8 13 160.0 Weakly correlated
10 ZKSCAN1 13 160.0 Weakly correlated
11 ZNF584 13 99.0 Weakly correlated
12 ZNF175 13 94.0 Weakly correlated
13 ZNF610 10 28.9 Moderately correlated
14 ZNF394 8 99.0 Weakly correlated
15 ZNF263 8 180.0 Weakly correlated
16 ZNF549 6 87.0 Weakly correlated
17 ZNF182 6 99.0 Weakly correlated
18 ZFP37 5 99.0 Weakly correlated
19 ZNF2 5 99.0 Weakly correlated
20 ZNF506 5 28.9 Moderately correlated
21 ZNF18 5 160.0 Weakly correlated
22 ZFP69B 5 99.0 Weakly correlated
23 ZNF101 4 43.0 Highly correlated
24 ZNF486 4 8.6 Weakly correlated
25 ZNF554 4 99.0 Weakly correlated
26 ZNF558 4 99.0 Weakly correlated
27 ZNF320 4 28.9 Moderately correlated
28 ZNF765 3 8.6 Weakly correlated
29 ZNF585B 3 99.0 Weakly correlated
30 ZNF707 3 74.0 Weakly correlated
31 ZNF701 3 28.9 Moderately correlated
32 ZNF669 3 43.0 Highly correlated
33 ZNF519 3 19.6 Weakly correlated
34 ZNF429 3 28.9 Moderately correlated
35 ZNF28 2 28.9 Moderately correlated
36 ZNF75D 2 94.0 Weakly correlated
37 ZNF723 2 15.2 Weakly correlated
38 ZNF140 2 99.0 Weakly correlated
39 ZNF133 2 99.0 Weakly correlated
40 ZNF705B 2 28.9 Moderately correlated
41 ZNF682 2 28.9 Moderately correlated
42 ZNF274 2 99.0 Weakly correlated
43 ZNF679 2 28.9 Moderately correlated
44 ZNF30 2 94.0 Weakly correlated
45 ZNF331 2 94.0 Weakly correlated
46 ZIM3 2 87.0 Weakly correlated
47 ZNF8 2 99.0 Weakly correlated
48 ZNF534 2 19.6 Weakly correlated
49 ZFP57 1 87.0 Weakly correlated
50 ZNF792 1 94.0 Weakly correlated
51 ZNF793 1 99.0 Weakly correlated
52 ZNF786 1 99.0 Weakly correlated
53 ZNF816 1 28.9 Moderately correlated
54 ZNF547 1 74.0 Weakly correlated
55 ZNF202 1 160.0 Weakly correlated
56 ZNF705D 1 28.9 Moderately correlated
57 ZNF264 1 99.0 Weakly correlated
58 ZNF677 1 99.0 Weakly correlated
59 ZNF641 1 99.0 Weakly correlated
60 ZNF479 1 6.4 Weakly correlated
61 ZNF562 1 28.9 Moderately correlated
62 ZNF480 1 43.0 Highly correlated
63 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF850 78 28.9 Moderately correlated
2 ZNF766 24 43.0 Highly correlated
3 ZNF197 4 99.0 Weakly correlated
4 ZNF263 4 180.0 Weakly correlated
5 ZNF589 2 28.9 Moderately correlated
6 ZNF175 2 94.0 Weakly correlated
7 ZNF584 2 99.0 Weakly correlated
8 ZNF680 2 28.9 Moderately correlated
9 ZNF677 1 99.0 Weakly correlated
10 ZNF816 1 28.9 Moderately correlated
11 ZNF793 1 99.0 Weakly correlated
12 ZNF792 1 94.0 Weakly correlated
13 ZNF585B 1 99.0 Weakly correlated
14 ZNF558 1 99.0 Weakly correlated
15 ZNF264 1 99.0 Weakly correlated
16 ZNF101 1 43.0 Highly correlated
17 ZNF382 1 99.0 Weakly correlated
18 ZNF92 1 28.9 Moderately correlated
19 ZNF701 1 28.9 Moderately correlated
20 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF766 43.0 Highly correlated
2 ZNF850 28.9 Moderately correlated