ZRdb KZFP & Repeats
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LTR_LTR19-INT

  • Name
    LTR19-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000434
Description :

A MER4 group endogenous retrovirus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttggtgccgaaacccgggacgggtgttgggggcagaggctctcttgcaacccaggaagcagtgggcagcggcagctcatcctgagttaactcctggatcctgagggtctctggccacccgccccgtcttttctctcacttcacttttcgagcgatttgcgtgaggaggacaactaacctgaaggggactgcgaggctcaggccggggctactccccagtgggctctcaaaaccctcaggtctcaggaatccacctccgaccgcccgcaacgggtatttcgctctctcctctcctcctcctcctcttctcttctctctctctctctntcttcctcgtgcggctccagtccgggaggccctttgccgattccaaccggaacatccaacatcggacactaatccagccgactggtaagatctgccctcccctggctttctcgcggtacccgggaaaagtcaggtctgccgtcccggtcctcggaggaccagcgggactaagctagaggaaatcttggggacgcccagtttcttctcagcttgaccgtcctctttagaaagaggattccgggtctctgtcttttgtctggggatgcctagaacaaaaacagacaccctcggcttcttctcaccagtccacatgggtgccaaacaatcccacattcctacgtcctccccactgggctgtctccttcacaacctcgccaaacttggcttacgggaancntaaagccaaagcgtttagttttttattgcaacacggcctggccccaatacaaattagataatgacagccgatggcccgaaaatggcacctttaactttcaaattctcagggaccttgacaactttataaccaggaatggcaaatggcaagaggttctctatattcaggctttcttctaccttaaatcccgaccctccctgtgtcaagcttgcacccctcatgaaatccttcttcttaatgaaaaccctccccgggtctctccttcctccgaaactccttcctccgaaaccccttttgaccctgcagatgaaccccctccgtattctcatccccctgcatccgctcctcgcccgtccgaaccctccgccccggtggcccctcctgcccccaagccttcagccccaaaccccgctcctcctccttctccacctgttacccgttcaaaaactgctccaaccagtcaaaccacctctgccattctccctctccgggaagtggctggggttaaaggcattgctcgcgttcatgtccctttctccatgtctgatttgtcgcagatctgggatctttctctgaaaatccctctcattatcgcagggaattcctgcacataacccaatcctttaatttaacttggcataacatttatataattctaacctccaccctcacccctaataaaaaagagcgctcagcttaattaaaatggatatccaagctatgagtatattcaaaaggcctttatgtttttctcttcataaatcttgttttcctggaaaaggttttttcccagtcaactgaattacttttctccactctgtcttgccactcttggtgcatgtatgaaagaccctaaaatgacttctggtggcctgggactccttgggaaaacagaaaaggcgccacaaatcccgttttgggaaaaatctctgttttccttatggaacccctggaattagaggtgaataagtacctctcaaaatctgtctttgtcttccagctatgcttgtttattaggccctggaaactgttttcctagccctgttcttaaagggcctcacccgaaggccaataatccaattgggaaattagcaaaaaaaaaatcttataactactggatcttcttctggttgtctgtgtggctatatatgtgttatgtgtgcgatgtctattaaaagaagctctaattaattggcctaagaaaaataagcgcttaaatcaaatatttttaagggaaaagtaaaagctgtgggacctttcagttcacgtgactttaatctttaaaacttactggtacagtaaaattagaaatgtcttaagagttgccagcatacgtttttgtttgcatttattaatcaagcaatttcatacttatctctgccaaatactataaggtgtcaaaatttggcatagaggctacaaaactataactcagcccaaacagaataatctttgcttgtgtaattttttaataaatgaaacattaatattggtttaatgaagatagctacatcttgaactatttagtgaaataccctaacttctaatcttgtggccttaggcagtctagtccacagacatgaaggaagtttgttttgggaaaggactgttatcatctttgatattaaagaaaagataatttatataaaaagaatcttatatggtaaattcttgtcctaaagtaaattaactggttgtttaaagagagggatgtttacaacaagtcagaaagtcgaggcatgtcagagattgtctgtgaaagtcgtgaaaaattttataaaagggaatttatgcaagaaatgttgtacaatttaaaagtgattaggcctcctgaatgctttataaaatgccactataactcttagctgtacaacttgcctgctttgcagctaggtaagacctaggacacatggagttaaatgctggaataagccagaccttatctgcacttctgtctaggtcctaggctctacacctagtacataattaaaatcccaaacttaccaaggttttcacaaaagtaaaggttgctaaaagttaacagtgtaacatgtatttaagactattgaaaaaacagtttacatatacttttggtaaaaagattataaggaggcatgagaatgtggatttttacctagattaaaaggttaaagaattgttttaagttgaataaaataaaaatgaaggtttaagcaagttttggaaggttaattgtaaaggaaattctgtgtgtaaacatattggctaaagttgaaggggtatcatccagtttttctgtaaattgagcattaaaataaaagcacaacgggtttctcttaaagcactaacctgctctttaacaaaaattataaagggttaaaaagggtctataaaaatcttaccttatggtcaaacattaaaattgggtaaatgtgtctacaaggttttattaaaaattgagtttaacattaatagcacactaatataaaggtaaaatttggcttatttggtataaaatcatacaggaagcattgtcaaatataaaatggtgtttggctttctttgggctatatttgtataaatatgttattggtatgtgttccaaagttatgggagactcctataattctgatatatcttagtgtacgttatcagtaataattataattgttatgttaaaattattgtgtgccacagaggtaacagatatccttgtcaattgtgtctttaactatggctaccctaaaactttttgtcatccataaacaattgttgtcttgttttggtcctctttagaaggtggttttataatcagctataaagctctaacaggtgctcttgaatgcaggtttctgataactttggagattgtgacatcagaatagaggaaaaacgttcaggactcttgaagagctaaaatgttcattaatatcaagcaggacaggaattaactgcatgaactgaactaataggagactggagtgatctttttgacgttttgcttaaaatattgctaatcctttgttttgcttttcaaagtcaaagaaacttttcttttgagctattgacagcttttaacaatttagtatactcccgtgaacaaaatttggagcatacttgtttctctctacctgattttctccagaatttggaaactatctgtgagtattcttaagttatggcaatatagttatttgcataagtgcaataagaatctgttttcttttgtaacaggacacaattggaaaaactggttatttttaccaaggctttgactggaatggtgtgctttcctttaaggaatcaaacttgacttatgaagccaataaagcccttggaaaactggcctcatattttgtgtacacagtccctgtacagggtttctgatctgtggtaagtaaagaatgtcactttctgacaggccaggaaccccaagttatcttggaacctcaagaggagaggaattcacccaactcataggtatttgatggtacaaatccatggctgggctcggctttaaaaaggtcttatctcagattccttctacggaacaaagttccatcaaagccaatttaaaaggcctatgtaacaaataattattcttgctgcactgtatgcaaataattaagccaagtataataaagcaaaccagtcctaccatgatttgtcttttaataaaaatgggaaactggagagagaaaattatgtttcaaaaactatagcacacctgttgttaaattctagtnttgcctaatgtttttcaatttttattattttctacngtttaaattaaattctaatttttctggctacaagtctccaaaataagctgtgctttcttaaagccctatgaactgaaaactagatgtttcagcaggcgctgcctctaagccccccgaccatcacaggaggaaatctcttcactgctggcgctgacaactaataactgagggtgcccggaatccttcgcccccacgtctagtgagtccacggaacccagggtaattaagacggtatccgttacaggaatcaactcctggatacatcacactcgagtcaaagcctggaaagctgaggaagcaacccctgacagcccagaggaacgtcctaaatatcaatgtaaagaaataggaaatcttaagctgaaaatcataaaaaataagtaactgagtgagaactactcatcttactcagtctcacccctacctcaccaaatactttttgtcgttcctacctctccttttaagccaaatattaaaactttttaatggaaattatttactacgccacccttgcgggaattgctttactcactctactatttgcagtaggactatatactgtagcaccctcagggtggaatatcggacagagaatctcaattactgtagcattttgcttaattattatcctcatagcaggaataacggttactaacagaaaataacacatgggcctttccaaacatgcgcctctgcctctcattaggtaaggaatgttgtttctatctcaaccaatcgggcctagtaagaaacgctgctgaaaaacttaaagaaagggctaaaaagctaagggaataccaaaacaaccaaatagattcttggtttgggaacaaaatcatagcatgggtcatcccattcctgggccctctcctaataatatgcctaggactaatgttcttaccctgcctaattaacctttttcaaagatttttaactgacaggatcatggccatttcacagacaactacccaaaaacatctacagacggcattgctcctacagtcaatccgagaccagaaaactctccgtcccctcgtcagcaggaagtagccagaaagaacacgccgcccctcgtcctttttataactatagggtctggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF320 8 28.9 Moderately correlated
2 ZNF486 7 8.6 Weakly correlated
3 ZNF850 4 28.9 Moderately correlated
4 ZNF479 4 6.4 Weakly correlated
5 ZNF43 4 43.0 Highly correlated
6 ZNF705D 4 28.9 Moderately correlated
7 ZNF382 4 99.0 Weakly correlated
8 ZNF549 4 87.0 Weakly correlated
9 ZNF92 3 28.9 Moderately correlated
10 ZNF534 3 19.6 Weakly correlated
11 ZNF705B 3 28.9 Moderately correlated
12 ZNF766 3 43.0 Highly correlated
13 ZNF197 3 99.0 Weakly correlated
14 ZNF793 3 99.0 Weakly correlated
15 ZNF554 2 99.0 Weakly correlated
16 ZNF589 2 28.9 Moderately correlated
17 ZNF519 2 19.6 Weakly correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZKSCAN8 2 160.0 Weakly correlated
20 ZNF331 2 94.0 Weakly correlated
21 ZNF263 2 180.0 Weakly correlated
22 ZNF611 1 19.6 Weakly correlated
23 ZFP69B 1 99.0 Weakly correlated
24 ZNF175 1 94.0 Weakly correlated
25 ZNF257 1 0.0 Weakly correlated
26 ZNF274 1 99.0 Weakly correlated
27 ZNF701 1 28.9 Moderately correlated
28 ZNF695 1 28.9 Moderately correlated
29 ZNF514 1 94.0 Weakly correlated
30 ZNF610 1 28.9 Moderately correlated
31 ZNF28 1 28.9 Moderately correlated
32 ZNF584 1 99.0 Weakly correlated
33 ZNF317 1 99.0 Weakly correlated
34 ZNF394 1 99.0 Weakly correlated
35 ZNF528 1 43.0 Highly correlated
36 ZNF429 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 4 43.0 Highly correlated
2 ZNF320 3 28.9 Moderately correlated
3 ZNF705D 3 28.9 Moderately correlated
4 ZNF793 3 99.0 Weakly correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZFP69B 1 99.0 Weakly correlated
7 ZNF766 1 43.0 Highly correlated
8 ZNF429 1 28.9 Moderately correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF331 1 94.0 Weakly correlated
11 ZNF382 1 99.0 Weakly correlated
12 ZNF28 1 28.9 Moderately correlated
13 ZNF549 1 87.0 Weakly correlated
14 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats