ZRdb KZFP & Repeats
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LTR_LTR18B

  • Name
    LTR18B
  • Repbase
    LTR18B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000429
Description :

LTR of HERVL endogenous retrovirus HERV18. 5 bp target siteduplications. Not observed in other mammals.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaggtacatggatgtgctttggtcaaggaataggccgaggcggacatccaggcctgcgtgactcagcgagtttggngcgcaggcgcatanctccacttgttatataacctgtttgtgtaagntcatacttggctctgagccactattgtctgtaaaaggtataactgccctgctgacgctgtacaggggctcttggggctcggctcggctcaacatggcttgacatggcgggcgcgctggcgcccagagaaagagagagagagccagagctgtccgtcttgcagacggacaggggggagccaggacacagctcggctcgctcgtgcccagagagagaaagagttaagctgctgaccctgaaggcaagggagagccggccgcgcagctgtgcgtgggggcggcaggagccgcagagccggancaagcagccgagacagaggcggacagtgtgagagagctgctgaagtgtgagaagctgctgatgagagagctgctgaataaaaccatatttcacctgcctacggccccccgagtgttctttcagctatctgcccatccacccactcccctcggacctcagcatgggctggaacctgaccccgggcctgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 110 8.6 Weakly correlated
2 ZNF766 99 43.0 Highly correlated
3 ZNF175 74 94.0 Weakly correlated
4 ZNF584 69 99.0 Weakly correlated
5 ZKSCAN8 68 160.0 Weakly correlated
6 ZNF589 68 28.9 Moderately correlated
7 ZNF197 64 99.0 Weakly correlated
8 ZNF382 48 99.0 Weakly correlated
9 ZKSCAN1 20 160.0 Weakly correlated
10 ZNF2 20 99.0 Weakly correlated
11 ZFP37 16 99.0 Weakly correlated
12 ZNF263 16 180.0 Weakly correlated
13 ZNF18 15 160.0 Weakly correlated
14 ZNF554 12 99.0 Weakly correlated
15 ZNF547 12 74.0 Weakly correlated
16 ZNF528 11 43.0 Highly correlated
17 ZNF549 10 87.0 Weakly correlated
18 ZNF610 10 28.9 Moderately correlated
19 ZNF394 8 99.0 Weakly correlated
20 ZNF563 7 28.9 Moderately correlated
21 ZNF680 7 28.9 Moderately correlated
22 ZNF679 7 28.9 Moderately correlated
23 ZNF17 7 69.0 Weakly correlated
24 ZNF320 7 28.9 Moderately correlated
25 ZFP69B 6 99.0 Weakly correlated
26 ZNF324 6 99.0 Weakly correlated
27 ZNF140 5 99.0 Weakly correlated
28 ZNF534 5 19.6 Weakly correlated
29 ZNF101 5 43.0 Highly correlated
30 ZNF30 5 94.0 Weakly correlated
31 ZNF701 5 28.9 Moderately correlated
32 ZNF792 5 94.0 Weakly correlated
33 ZNF597 4 94.0 Weakly correlated
34 ZNF92 4 28.9 Moderately correlated
35 ZNF558 4 99.0 Weakly correlated
36 ZNF251 4 94.0 Weakly correlated
37 ZNF274 3 99.0 Weakly correlated
38 ZNF44 3 43.0 Highly correlated
39 ZNF479 3 6.4 Weakly correlated
40 ZNF483 3 99.0 Weakly correlated
41 ZFP57 2 87.0 Weakly correlated
42 ZNF793 2 99.0 Weakly correlated
43 ZNF669 2 43.0 Highly correlated
44 ZNF723 2 15.2 Weakly correlated
45 ZNF429 2 28.9 Moderately correlated
46 ZNF202 2 160.0 Weakly correlated
47 ZNF273 2 28.9 Moderately correlated
48 ZNF257 2 0.0 Weakly correlated
49 ZNF705D 1 28.9 Moderately correlated
50 ZNF93 1 8.6 Weakly correlated
51 ZIM3 1 87.0 Weakly correlated
52 ZNF91 1 6.0 Weakly correlated
53 ZNF823 1 43.0 Highly correlated
54 ZNF816 1 28.9 Moderately correlated
55 ZNF133 1 99.0 Weakly correlated
56 ZNF780B 1 74.0 Weakly correlated
57 ZNF778 1 74.0 Weakly correlated
58 ZNF224 1 69.0 Weakly correlated
59 ZNF707 1 74.0 Weakly correlated
60 ZNF519 1 19.6 Weakly correlated
61 ZNF705B 1 28.9 Moderately correlated
62 ZNF264 1 99.0 Weakly correlated
63 ZNF286A 1 160.0 Weakly correlated
64 ZNF28 1 28.9 Moderately correlated
65 ZNF331 1 94.0 Weakly correlated
66 ZNF607 1 43.0 Highly correlated
67 ZNF425 1 94.0 Weakly correlated
68 ZNF441 1 43.0 Highly correlated
69 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 16 8.6 Weakly correlated
2 ZFP37 7 99.0 Weakly correlated
3 ZNF17 6 69.0 Weakly correlated
4 ZNF554 6 99.0 Weakly correlated
5 ZNF589 5 28.9 Moderately correlated
6 ZNF610 4 28.9 Moderately correlated
7 ZNF197 3 99.0 Weakly correlated
8 ZNF584 3 99.0 Weakly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF793 2 99.0 Weakly correlated
11 ZNF549 2 87.0 Weakly correlated
12 ZNF44 1 43.0 Highly correlated
13 ZNF2 1 99.0 Weakly correlated
14 ZNF257 1 0.0 Weakly correlated
15 ZNF175 1 94.0 Weakly correlated
16 ZNF331 1 94.0 Weakly correlated
17 ZNF701 1 28.9 Moderately correlated
18 ZNF597 1 94.0 Weakly correlated
19 ZNF707 1 74.0 Weakly correlated
20 ZNF18 1 160.0 Weakly correlated
21 ZNF766 1 43.0 Highly correlated
22 ZNF30 1 94.0 Weakly correlated
23 ZNF320 1 28.9 Moderately correlated
24 ZNF479 1 6.4 Weakly correlated
25 ZNF382 1 99.0 Weakly correlated
26 ZNF528 1 43.0 Highly correlated
27 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF17 69.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated