ZRdb KZFP & Repeats
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LTR_LTR18A

  • Name
    LTR18A
  • Repbase
    LTR18A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000428
Description :

LTR of HERVL endogenous retrovirus HERV18. 5 bp target siteduplications. Not observed in other mammals.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaagggaaatggctgcgctttagtcaggagtaggccgaggcggccttccggcgcagcatgactcagcgggtttggagcgcaggcgcacaactccgcacattatgtaaccacgccacgtgaggcgcattaggtgatcacccacgtgagctcgtgcttggctcggagccactattgtctgtaaaaggtataattaccctgctaacgctgtacatacggcttgcgcccaggctcgctcgcgcccagagagagagtaaagccatgtcgaaactgtctacgattcctcgagtgtttttccagctacccgccactcgcccaccgactcccctcggacctcagttcgggctagaacctgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 193 8.6 Weakly correlated
2 ZNF382 82 99.0 Weakly correlated
3 ZNF585B 36 99.0 Weakly correlated
4 ZNF554 36 99.0 Weakly correlated
5 ZNF547 33 74.0 Weakly correlated
6 ZNF324 30 99.0 Weakly correlated
7 ZNF766 27 43.0 Highly correlated
8 ZNF549 27 87.0 Weakly correlated
9 ZNF394 26 99.0 Weakly correlated
10 ZNF610 25 28.9 Moderately correlated
11 ZNF528 24 43.0 Highly correlated
12 ZNF589 19 28.9 Moderately correlated
13 ZNF175 19 94.0 Weakly correlated
14 ZNF251 15 94.0 Weakly correlated
15 ZNF263 15 180.0 Weakly correlated
16 ZNF2 15 99.0 Weakly correlated
17 ZNF584 14 99.0 Weakly correlated
18 ZNF197 14 99.0 Weakly correlated
19 ZNF680 13 28.9 Moderately correlated
20 ZNF558 13 99.0 Weakly correlated
21 ZFP37 13 99.0 Weakly correlated
22 ZKSCAN8 12 160.0 Weakly correlated
23 ZNF222 11 43.0 Highly correlated
24 ZFP69B 10 99.0 Weakly correlated
25 ZNF18 9 160.0 Weakly correlated
26 ZNF429 9 28.9 Moderately correlated
27 ZNF317 9 99.0 Weakly correlated
28 ZNF30 9 94.0 Weakly correlated
29 ZKSCAN1 8 160.0 Weakly correlated
30 ZNF534 7 19.6 Weakly correlated
31 ZNF320 7 28.9 Moderately correlated
32 ZNF257 7 0.0 Weakly correlated
33 ZNF101 7 43.0 Highly correlated
34 ZNF679 6 28.9 Moderately correlated
35 ZNF264 5 99.0 Weakly correlated
36 ZFP57 5 87.0 Weakly correlated
37 ZNF8 5 99.0 Weakly correlated
38 ZNF140 5 99.0 Weakly correlated
39 ZNF586 5 43.0 Highly correlated
40 ZNF479 4 6.4 Weakly correlated
41 ZNF440 4 28.9 Moderately correlated
42 ZNF136 3 74.0 Weakly correlated
43 ZNF530 3 28.9 Moderately correlated
44 ZNF684 3 99.0 Weakly correlated
45 ZNF675 3 8.6 Weakly correlated
46 ZNF490 3 43.0 Highly correlated
47 ZNF44 3 43.0 Highly correlated
48 ZNF555 3 94.0 Weakly correlated
49 ZNF641 3 99.0 Weakly correlated
50 ZNF33A 3 99.0 Weakly correlated
51 ZNF816 3 28.9 Moderately correlated
52 ZNF792 3 94.0 Weakly correlated
53 ZNF658 2 99.0 Weakly correlated
54 ZNF587 2 28.9 Moderately correlated
55 ZNF331 2 94.0 Weakly correlated
56 ZNF506 2 28.9 Moderately correlated
57 ZNF707 2 74.0 Weakly correlated
58 ZNF419 2 28.9 Moderately correlated
59 ZNF100 2 28.9 Moderately correlated
60 ZNF141 2 43.0 Highly correlated
61 ZNF75D 2 94.0 Weakly correlated
62 ZNF224 2 69.0 Weakly correlated
63 ZNF17 2 69.0 Weakly correlated
64 ZNF184 2 99.0 Weakly correlated
65 ZNF674 1 99.0 Weakly correlated
66 RBAK 1 99.0 Weakly correlated
67 ZNF7 1 99.0 Weakly correlated
68 ZNF793 1 99.0 Weakly correlated
69 ZNF730 1 19.6 Weakly correlated
70 ZNF92 1 28.9 Moderately correlated
71 ZNF727 1 19.6 Weakly correlated
72 ZNF695 1 28.9 Moderately correlated
73 ZNF302 1 43.0 Highly correlated
74 ZIM3 1 87.0 Weakly correlated
75 ZNF160 1 74.0 Weakly correlated
76 ZNF181 1 94.0 Weakly correlated
77 ZNF182 1 99.0 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF230 1 28.9 Moderately correlated
80 ZNF274 1 99.0 Weakly correlated
81 ZNF28 1 28.9 Moderately correlated
82 ZNF671 1 94.0 Weakly correlated
83 ZNF418 1 43.0 Highly correlated
84 ZNF41 1 99.0 Weakly correlated
85 ZNF433 1 43.0 Highly correlated
86 ZNF514 1 94.0 Weakly correlated
87 ZNF611 1 19.6 Weakly correlated
88 ZNF616 1 43.0 Highly correlated
89 ZNF669 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF554 25 99.0 Weakly correlated
2 ZNF486 16 8.6 Weakly correlated
3 ZNF610 7 28.9 Moderately correlated
4 ZFP37 7 99.0 Weakly correlated
5 ZNF534 5 19.6 Weakly correlated
6 ZNF429 5 28.9 Moderately correlated
7 ZNF528 3 43.0 Highly correlated
8 ZNF766 2 43.0 Highly correlated
9 ZNF331 2 94.0 Weakly correlated
10 ZNF18 2 160.0 Weakly correlated
11 ZNF320 2 28.9 Moderately correlated
12 ZNF30 1 94.0 Weakly correlated
13 ZNF684 1 99.0 Weakly correlated
14 ZNF324 1 99.0 Weakly correlated
15 ZNF440 1 28.9 Moderately correlated
16 ZNF530 1 28.9 Moderately correlated
17 ZNF671 1 94.0 Weakly correlated
18 ZNF506 1 28.9 Moderately correlated
19 ZNF585B 1 99.0 Weakly correlated
20 ZNF181 1 94.0 Weakly correlated
21 ZNF382 1 99.0 Weakly correlated
22 ZNF587 1 28.9 Moderately correlated
23 ZNF490 1 43.0 Highly correlated
24 ZNF479 1 6.4 Weakly correlated
25 ZNF75D 1 94.0 Weakly correlated
26 ZNF586 1 43.0 Highly correlated
27 ZNF317 1 99.0 Weakly correlated
28 ZNF816 1 28.9 Moderately correlated
29 ZNF680 1 28.9 Moderately correlated
30 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF554 99.0 Weakly correlated
2 ZNF610 28.9 Moderately correlated