ZRdb KZFP & Repeats
...

LTR_LTR16E2

  • Name
    LTR16E2
  • Repbase
    LTR16E2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000426
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtatcggacacctcttgtgcaccacttcanatcctctcggccccacctcttactccagccactgctgcggcgaccagttccgcgcaggcttcgaccagcttcgcgcaggtgcaacctgacagcgcctcgcctcaggcccgcgccgcgtacctctcgcttcctgccccggggcttctctgacgccgcggcgtgggacgcctgcgggaacccgctcggcactcacgcatgcgcaacccggaagtgcgggggagttaacgccccgtggggcaacccttgaccaatgggggacgggagccgatggataaatgcttccccctttcgtcccccgggcggacagttctgagacgcatttcatanggctcctcagaaggtcccggcgggatcgagcaccagtcgcccacagcggtggccaactcgataacgcatccttgtattggctttccctccttccctgtttcactccccctgtccctcactcctgctccctgggatcacttcccaaaataaactacctgcacgcaagcctttgtctcaggctctgctttcgggggaacccaggctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 77 99.0 Highly correlated
2 ZNF263 46 180.0 Weakly correlated
3 ZNF479 27 6.4 Weakly correlated
4 ZNF766 24 43.0 Weakly correlated
5 ZNF705B 21 28.9 Weakly correlated
6 ZNF257 18 0.0 Weakly correlated
7 ZNF18 17 160.0 Weakly correlated
8 ZKSCAN1 16 160.0 Weakly correlated
9 ZNF705D 16 28.9 Weakly correlated
10 ZNF2 16 99.0 Highly correlated
11 ZFP37 15 99.0 Highly correlated
12 ZNF723 15 15.2 Weakly correlated
13 ZNF534 15 19.6 Weakly correlated
14 ZNF679 14 28.9 Weakly correlated
15 ZNF317 14 99.0 Highly correlated
16 ZNF680 14 28.9 Weakly correlated
17 ZNF394 14 99.0 Highly correlated
18 ZNF589 13 28.9 Weakly correlated
19 ZNF684 11 99.0 Highly correlated
20 ZNF251 10 94.0 Moderately correlated
21 ZNF75D 10 94.0 Moderately correlated
22 ZNF175 9 94.0 Moderately correlated
23 ZNF735 9 28.9 Weakly correlated
24 ZNF701 8 28.9 Weakly correlated
25 ZFP57 8 87.0 Moderately correlated
26 ZNF528 8 43.0 Weakly correlated
27 ZNF584 7 99.0 Highly correlated
28 ZNF28 6 28.9 Weakly correlated
29 ZIM3 6 87.0 Moderately correlated
30 ZNF554 6 99.0 Highly correlated
31 ZNF274 5 99.0 Highly correlated
32 ZNF506 5 28.9 Weakly correlated
33 ZNF429 5 28.9 Weakly correlated
34 ZNF793 5 99.0 Highly correlated
35 ZNF101 4 43.0 Weakly correlated
36 ZNF320 4 28.9 Weakly correlated
37 ZNF84 4 99.0 Highly correlated
38 ZNF786 3 99.0 Highly correlated
39 ZNF549 3 87.0 Moderately correlated
40 ZNF563 3 28.9 Weakly correlated
41 ZNF610 3 28.9 Weakly correlated
42 ZNF490 3 43.0 Weakly correlated
43 ZNF486 3 8.6 Weakly correlated
44 ZNF483 3 99.0 Highly correlated
45 ZNF197 3 99.0 Highly correlated
46 ZFP69B 3 99.0 Highly correlated
47 ZNF133 2 99.0 Highly correlated
48 ZNF282 2 319.0 Weakly correlated
49 ZNF682 2 28.9 Weakly correlated
50 ZNF707 2 74.0 Weakly correlated
51 ZNF182 2 99.0 Highly correlated
52 ZNF611 2 19.6 Weakly correlated
53 ZNF597 2 94.0 Moderately correlated
54 ZNF331 2 94.0 Moderately correlated
55 ZNF567 2 99.0 Highly correlated
56 ZNF558 2 99.0 Highly correlated
57 ZKSCAN8 2 160.0 Weakly correlated
58 ZNF792 2 94.0 Moderately correlated
59 ZKSCAN5 2 160.0 Weakly correlated
60 ZNF441 2 43.0 Weakly correlated
61 ZNF485 2 94.0 Moderately correlated
62 ZNF114 1 28.9 Weakly correlated
63 ZNF92 1 28.9 Weakly correlated
64 ZNF780A 1 43.0 Weakly correlated
65 ZNF75A 1 94.0 Moderately correlated
66 ZNF141 1 43.0 Weakly correlated
67 ZNF81 1 99.0 Highly correlated
68 ZNF85 1 28.9 Weakly correlated
69 ZNF264 1 99.0 Highly correlated
70 ZNF267 1 43.0 Weakly correlated
71 ZNF8 1 99.0 Highly correlated
72 ZNF560 1 43.0 Weakly correlated
73 ZNF480 1 43.0 Weakly correlated
74 ZNF471 1 94.0 Moderately correlated
75 ZNF519 1 19.6 Weakly correlated
76 ZNF436 1 180.0 Weakly correlated
77 ZNF425 1 94.0 Moderately correlated
78 ZNF543 1 99.0 Highly correlated
79 ZNF547 1 74.0 Weakly correlated
80 ZNF41 1 99.0 Highly correlated
81 ZNF350 1 99.0 Highly correlated
82 ZNF695 1 28.9 Weakly correlated
83 ZNF347 1 43.0 Weakly correlated
84 ZNF334 1 99.0 Highly correlated
85 ZNF324 1 99.0 Highly correlated
86 ZNF641 1 99.0 Highly correlated
87 ZNF674 1 99.0 Highly correlated
88 ZNF677 1 99.0 Highly correlated
89 ZNF287 1 99.0 Highly correlated
90 ZNF284 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 12 180.0 Weakly correlated
2 ZNF534 10 19.6 Weakly correlated
3 ZNF257 10 0.0 Weakly correlated
4 ZNF723 8 15.2 Weakly correlated
5 ZNF479 8 6.4 Weakly correlated
6 ZNF684 8 99.0 Highly correlated
7 ZNF680 6 28.9 Weakly correlated
8 ZNF75D 4 94.0 Moderately correlated
9 ZNF506 4 28.9 Weakly correlated
10 ZNF735 4 28.9 Weakly correlated
11 ZFP57 3 87.0 Moderately correlated
12 ZNF28 3 28.9 Weakly correlated
13 ZNF793 3 99.0 Highly correlated
14 ZNF251 3 94.0 Moderately correlated
15 ZNF84 2 99.0 Highly correlated
16 ZNF679 2 28.9 Weakly correlated
17 ZNF429 2 28.9 Weakly correlated
18 ZNF382 2 99.0 Highly correlated
19 ZKSCAN5 2 160.0 Weakly correlated
20 ZNF589 2 28.9 Weakly correlated
21 ZNF705B 2 28.9 Weakly correlated
22 ZNF485 2 94.0 Moderately correlated
23 ZNF317 2 99.0 Highly correlated
24 ZNF320 2 28.9 Weakly correlated
25 ZNF549 2 87.0 Moderately correlated
26 ZNF597 1 94.0 Moderately correlated
27 ZNF483 1 99.0 Highly correlated
28 ZFP37 1 99.0 Highly correlated
29 ZNF682 1 28.9 Weakly correlated
30 ZNF677 1 99.0 Highly correlated
31 ZNF674 1 99.0 Highly correlated
32 ZNF780A 1 43.0 Weakly correlated
33 ZNF175 1 94.0 Moderately correlated
34 ZIM3 1 87.0 Moderately correlated
35 ZNF287 1 99.0 Highly correlated
36 ZNF18 1 160.0 Weakly correlated
37 ZNF766 1 43.0 Weakly correlated
38 ZNF695 1 28.9 Weakly correlated
39 ZNF347 1 43.0 Weakly correlated
40 ZNF490 1 43.0 Weakly correlated
41 ZNF81 1 99.0 Highly correlated
42 ZKSCAN8 1 160.0 Weakly correlated
43 ZNF480 1 43.0 Weakly correlated
44 ZNF350 1 99.0 Highly correlated
45 ZNF707 1 74.0 Weakly correlated
46 ZNF2 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated