ZRdb KZFP & Repeats
...

LTR_LTR16E1

  • Name
    LTR16E1
  • Repbase
    LTR16E1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000425
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagcagacgcctctggtgccccgcgtcacatcccctcggcccacctctgatttcagccgcagctgcggtggacagttccgtgcgagctcagactcacctttgctgacagcgtcccacctcaagcgcgcgccgtgcgtctttctgctttctgccccagggccttctccgacgccgcgggagcccgctcggcccgcgcgcaagcgcagcccggaagtgcgggggagttaacgcccccgggggcaaccctcaaccaatgggggacgggagccggtggataaatgccccagcctcccgtccttcaggtggacaattctgggaggcattctgtacgcttctcaggaggtcccagcgggatcgagccccngttgcccacagcggcgacctcgataacgcacccttatattggcttttcctccttccctgtctcacttccccgctccctcactcctgcttcctgggatcacctcccaaataaactacctgcacccaagtccttgtctcaggctctgctttcgggggaacccaaactaagacag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 64 43.0 Weakly correlated
2 ZNF382 59 99.0 Highly correlated
3 ZNF263 47 180.0 Weakly correlated
4 ZNF679 27 28.9 Weakly correlated
5 ZNF479 26 6.4 Weakly correlated
6 ZNF257 26 0.0 Weakly correlated
7 ZNF197 22 99.0 Highly correlated
8 ZNF320 19 28.9 Weakly correlated
9 ZNF589 19 28.9 Weakly correlated
10 ZNF534 18 19.6 Weakly correlated
11 ZNF175 18 94.0 Moderately correlated
12 ZNF584 17 99.0 Highly correlated
13 ZKSCAN1 16 160.0 Weakly correlated
14 ZNF18 16 160.0 Weakly correlated
15 ZKSCAN8 14 160.0 Weakly correlated
16 ZNF394 13 99.0 Highly correlated
17 ZNF2 13 99.0 Highly correlated
18 ZNF680 13 28.9 Weakly correlated
19 ZNF705B 10 28.9 Weakly correlated
20 ZNF317 10 99.0 Highly correlated
21 ZFP37 9 99.0 Highly correlated
22 ZIM3 9 87.0 Moderately correlated
23 ZNF793 9 99.0 Highly correlated
24 ZNF75D 9 94.0 Moderately correlated
25 ZNF701 8 28.9 Weakly correlated
26 ZNF274 8 99.0 Highly correlated
27 ZNF723 8 15.2 Weakly correlated
28 ZNF101 6 43.0 Weakly correlated
29 ZNF705D 5 28.9 Weakly correlated
30 ZNF528 5 43.0 Weakly correlated
31 ZNF506 5 28.9 Weakly correlated
32 ZFP69B 5 99.0 Highly correlated
33 ZNF684 4 99.0 Highly correlated
34 ZNF597 4 94.0 Moderately correlated
35 ZNF554 4 99.0 Highly correlated
36 ZNF610 4 28.9 Weakly correlated
37 ZNF519 4 19.6 Weakly correlated
38 ZNF816 4 28.9 Weakly correlated
39 ZNF485 4 94.0 Moderately correlated
40 ZNF425 3 94.0 Moderately correlated
41 ZNF17 3 69.0 Weakly correlated
42 ZNF273 3 28.9 Weakly correlated
43 ZNF140 3 99.0 Highly correlated
44 ZNF490 3 43.0 Weakly correlated
45 ZNF786 3 99.0 Highly correlated
46 ZNF331 3 94.0 Moderately correlated
47 ZNF695 2 28.9 Weakly correlated
48 ZNF224 2 69.0 Weakly correlated
49 ZNF674 2 99.0 Highly correlated
50 ZNF671 2 94.0 Moderately correlated
51 ZNF585B 2 99.0 Highly correlated
52 ZNF735 2 28.9 Weakly correlated
53 ZNF567 2 99.0 Highly correlated
54 ZNF558 2 99.0 Highly correlated
55 ZNF324 2 99.0 Highly correlated
56 ZNF547 2 74.0 Weakly correlated
57 ZNF823 2 43.0 Weakly correlated
58 ZFP57 2 87.0 Moderately correlated
59 ZNF468 2 28.9 Weakly correlated
60 ZNF486 2 8.6 Weakly correlated
61 ZNF549 2 87.0 Moderately correlated
62 ZNF75A 1 94.0 Moderately correlated
63 ZNF133 1 99.0 Highly correlated
64 ZKSCAN5 1 160.0 Weakly correlated
65 ZNF808 1 19.6 Weakly correlated
66 ZNF789 1 99.0 Highly correlated
67 ZNF707 1 74.0 Weakly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF114 1 28.9 Weakly correlated
70 ZNF85 1 28.9 Weakly correlated
71 ZNF189 1 99.0 Highly correlated
72 ZNF37A 1 99.0 Highly correlated
73 ZNF700 1 28.9 Weakly correlated
74 ZNF93 1 8.6 Weakly correlated
75 ZNF582 1 99.0 Highly correlated
76 ZNF429 1 28.9 Weakly correlated
77 ZNF433 1 43.0 Weakly correlated
78 ZNF436 1 180.0 Weakly correlated
79 ZNF440 1 28.9 Weakly correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZFP14 1 99.0 Highly correlated
82 ZNF343 1 74.0 Weakly correlated
83 ZNF337 1 43.0 Weakly correlated
84 ZNF334 1 99.0 Highly correlated
85 ZNF202 1 160.0 Weakly correlated
86 ZNF287 1 99.0 Highly correlated
87 ZNF585A 1 99.0 Highly correlated
88 ZNF284 1 43.0 Weakly correlated
89 ZNF251 1 94.0 Moderately correlated
90 ZNF611 1 19.6 Weakly correlated
91 ZNF616 1 43.0 Weakly correlated
92 ZNF675 1 8.6 Weakly correlated
93 ZNF222 1 43.0 Weakly correlated
94 ZNF682 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 13 6.4 Weakly correlated
2 ZNF257 12 0.0 Weakly correlated
3 ZNF534 11 19.6 Weakly correlated
4 ZNF320 9 28.9 Weakly correlated
5 ZNF263 8 180.0 Weakly correlated
6 ZNF506 5 28.9 Weakly correlated
7 ZNF766 4 43.0 Weakly correlated
8 ZNF793 4 99.0 Highly correlated
9 ZNF589 4 28.9 Weakly correlated
10 ZNF679 4 28.9 Weakly correlated
11 ZNF197 4 99.0 Highly correlated
12 ZNF584 3 99.0 Highly correlated
13 ZNF18 3 160.0 Weakly correlated
14 ZNF75D 3 94.0 Moderately correlated
15 ZNF684 3 99.0 Highly correlated
16 ZNF680 3 28.9 Weakly correlated
17 ZNF2 2 99.0 Highly correlated
18 ZNF382 2 99.0 Highly correlated
19 ZNF554 2 99.0 Highly correlated
20 ZNF175 2 94.0 Moderately correlated
21 ZNF317 2 99.0 Highly correlated
22 ZNF468 2 28.9 Weakly correlated
23 ZNF674 2 99.0 Highly correlated
24 ZIM3 2 87.0 Moderately correlated
25 ZFP37 2 99.0 Highly correlated
26 ZNF433 1 43.0 Weakly correlated
27 ZNF287 1 99.0 Highly correlated
28 ZNF707 1 74.0 Weakly correlated
29 ZNF671 1 94.0 Moderately correlated
30 ZNF675 1 8.6 Weakly correlated
31 ZFP14 1 99.0 Highly correlated
32 ZNF585A 1 99.0 Highly correlated
33 ZNF705D 1 28.9 Weakly correlated
34 ZNF485 1 94.0 Moderately correlated
35 ZNF37A 1 99.0 Highly correlated
36 ZNF189 1 99.0 Highly correlated
37 ZNF823 1 43.0 Weakly correlated
38 ZNF723 1 15.2 Weakly correlated
39 ZNF597 1 94.0 Moderately correlated
40 ZNF549 1 87.0 Moderately correlated
41 ZNF528 1 43.0 Weakly correlated
42 ZNF816 1 28.9 Weakly correlated
43 ZNF567 1 99.0 Highly correlated
44 ZNF334 1 99.0 Highly correlated
45 ZNF141 1 43.0 Weakly correlated
46 ZKSCAN5 1 160.0 Weakly correlated
47 ZKSCAN1 1 160.0 Weakly correlated
48 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated