ZRdb KZFP & Repeats
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LTR_LTR16D2

  • Name
    LTR16D2
  • Repbase
    LTR16D2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000424
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtattggacacaaaccttgtgcgccttctcagattccctcgaccgcctccttctttctctctcttggccggcgccccacccgcgccgggtcgcccctccactttcggacttggatgaaacgccacaccgcggggcatgggatctggcttcctgagcggccgccgaaggggccggatgacgcaacccggaagtgcaggggagttagctccccgtggggtgaaccttgaccaatgggaaacgggagacgggagggagccgggcagataaattccccctcctttctctcttccgtggactactccgaggtgcggttcctccttgcaacccttccggagaagtcccgcgtgccgagcgaacacgcctgctgagcgacctgctgtgtctcttcgcggctcgttgtgaagcggtagccagcgcggtaacgcatcgcatcgcattgcttcgcatctttccttgcctcacttccctttttcctcaccctcgccgccctgggcttgcacctcccaaataaagtgttagcaccttaatccttgcctcaggctctgctttctagaggacccgggctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Highly correlated
2 ZKSCAN1 6 160.0 Weakly correlated
3 ZNF766 6 43.0 Weakly correlated
4 ZNF558 4 99.0 Highly correlated
5 ZKSCAN8 4 160.0 Weakly correlated
6 ZNF589 4 28.9 Weakly correlated
7 ZNF394 4 99.0 Highly correlated
8 ZNF317 4 99.0 Highly correlated
9 ZNF263 4 180.0 Weakly correlated
10 ZFP57 3 87.0 Moderately correlated
11 ZNF534 3 19.6 Weakly correlated
12 ZNF584 3 99.0 Highly correlated
13 ZNF679 3 28.9 Weakly correlated
14 ZFP37 3 99.0 Highly correlated
15 ZNF175 3 94.0 Moderately correlated
16 ZNF705B 3 28.9 Weakly correlated
17 ZNF251 2 94.0 Moderately correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZNF671 2 94.0 Moderately correlated
20 ZNF18 2 160.0 Weakly correlated
21 ZNF701 2 28.9 Weakly correlated
22 ZNF2 2 99.0 Highly correlated
23 ZNF257 2 0.0 Weakly correlated
24 ZNF680 1 28.9 Weakly correlated
25 ZNF705D 1 28.9 Weakly correlated
26 ZNF684 1 99.0 Highly correlated
27 ZNF585A 1 99.0 Highly correlated
28 ZNF75D 1 94.0 Moderately correlated
29 ZNF563 1 28.9 Weakly correlated
30 ZNF823 1 43.0 Weakly correlated
31 ZNF554 1 99.0 Highly correlated
32 ZNF528 1 43.0 Weakly correlated
33 ZNF506 1 28.9 Weakly correlated
34 ZNF468 1 28.9 Weakly correlated
35 ZNF445 1 99.0 Highly correlated
36 ZNF41 1 99.0 Highly correlated
37 ZNF33A 1 99.0 Highly correlated
38 ZNF28 1 28.9 Weakly correlated
39 ZNF230 1 28.9 Weakly correlated
40 ZNF197 1 99.0 Highly correlated
41 ZNF133 1 99.0 Highly correlated
42 ZNF114 1 28.9 Weakly correlated
43 ZNF101 1 43.0 Weakly correlated
44 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 3 19.6 Weakly correlated
2 ZNF671 2 94.0 Moderately correlated
3 ZNF382 2 99.0 Highly correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF585A 1 99.0 Highly correlated
6 ZNF41 1 99.0 Highly correlated
7 ZNF445 1 99.0 Highly correlated
8 ZNF28 1 28.9 Weakly correlated
9 ZNF684 1 99.0 Highly correlated
10 ZNF554 1 99.0 Highly correlated
11 ZNF468 1 28.9 Weakly correlated
12 ZFP37 1 99.0 Highly correlated
13 ZNF257 1 0.0 Weakly correlated
14 ZNF133 1 99.0 Highly correlated
15 ZKSCAN8 1 160.0 Weakly correlated
16 ZKSCAN1 1 160.0 Weakly correlated
17 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats