ZRdb KZFP & Repeats
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LTR_LTR16D1

  • Name
    LTR16D1
  • Repbase
    LTR16D1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000423
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtatcggacacaaaccttgtgcgccttctcagattccctcgactgcctccttcttccgaaggtgccgcctcctncccgggccactccgctgccaccgcctttgctgagctccctgagctggctggagtccgagttgaagccccgggcctgcatggccctcagtcccacacgccgagccccatccgcgccgagtcgcccctccacttccggacttggatgaaacgccacaccgcggggcatgggatctggcttcctgagcggccgccgaaggggccggatgacgcaacccggaagtgtaggggagttagctccccgtggggtgaaccttgaccaatgggaaacgggagacgggagggagccgggcagataaattccccctcctttctcccttccgtggactgctccgaggtgtggtttctccttgcagcccttccggagaagtcccgcgtgccgagcgaacacgcctgccgagcgacctgctgtgtctcttcgcggctcgtcgtgaagcggtggccagcgcggtaacgcatcgcatcgcattgcttcgcatctttccttgcctcacttccctttttcctcaccctcaccgccctgggcttgcacctcccaaataaagtgtcagcactttaatccttgcctcaggctctgctttctagaggacccgggctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 8 43.0 Weakly correlated
2 ZNF382 7 99.0 Highly correlated
3 ZNF263 6 180.0 Weakly correlated
4 ZFP37 5 99.0 Highly correlated
5 ZNF18 5 160.0 Weakly correlated
6 ZKSCAN1 4 160.0 Weakly correlated
7 ZNF589 4 28.9 Weakly correlated
8 ZNF197 4 99.0 Highly correlated
9 ZNF257 4 0.0 Weakly correlated
10 ZNF2 4 99.0 Highly correlated
11 ZNF584 3 99.0 Highly correlated
12 ZNF175 3 94.0 Moderately correlated
13 ZIM3 3 87.0 Moderately correlated
14 ZNF394 3 99.0 Highly correlated
15 ZNF324 3 99.0 Highly correlated
16 ZNF682 2 28.9 Weakly correlated
17 ZNF610 2 28.9 Weakly correlated
18 ZNF554 2 99.0 Highly correlated
19 ZNF701 2 28.9 Weakly correlated
20 ZNF479 2 6.4 Weakly correlated
21 ZFP69B 2 99.0 Highly correlated
22 ZNF251 2 94.0 Moderately correlated
23 ZFP69 2 99.0 Highly correlated
24 ZKSCAN8 2 160.0 Weakly correlated
25 ZNF320 2 28.9 Weakly correlated
26 ZKSCAN5 2 160.0 Weakly correlated
27 ZNF671 1 94.0 Moderately correlated
28 ZNF8 1 99.0 Highly correlated
29 ZNF85 1 28.9 Weakly correlated
30 ZNF792 1 94.0 Moderately correlated
31 ZNF765 1 8.6 Weakly correlated
32 ZNF707 1 74.0 Weakly correlated
33 ZNF705B 1 28.9 Weakly correlated
34 ZNF684 1 99.0 Highly correlated
35 ZNF680 1 28.9 Weakly correlated
36 ZNF679 1 28.9 Weakly correlated
37 ZNF605 1 99.0 Highly correlated
38 ZNF101 1 43.0 Weakly correlated
39 ZNF140 1 99.0 Highly correlated
40 ZNF558 1 99.0 Highly correlated
41 ZNF519 1 19.6 Weakly correlated
42 ZNF486 1 8.6 Weakly correlated
43 ZNF480 1 43.0 Weakly correlated
44 RBAK 1 99.0 Highly correlated
45 ZNF431 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN5 2 160.0 Weakly correlated
2 ZNF257 2 0.0 Weakly correlated
3 ZFP37 1 99.0 Highly correlated
4 ZFP69 1 99.0 Highly correlated
5 ZIM3 1 87.0 Moderately correlated
6 ZNF479 1 6.4 Weakly correlated
7 ZNF18 1 160.0 Weakly correlated
8 ZNF684 1 99.0 Highly correlated
9 ZNF263 1 180.0 Weakly correlated
10 ZNF707 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats