ZRdb KZFP & Repeats
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LTR_LTR16D

  • Name
    LTR16D
  • Repbase
    LTR16D
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000422
Description :

The associated internal sequence is closely related to that of HERVL. 5bp duplication sites.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtatcggacacatcttatgcgcctcctcagattctctcggcctcacctgtctcccggaccctcggccgcttgctctgcctcagccgccgccgcggccgaccgactccgtgcgggcccatgcggttccgccgcctgaggccgaccagccacatgcccggagtctctggctcctcccgccacttccggactcggatgaaacgccacaccgcagggcgtgggatctggcttcccnagcggctgccgaaggggccggatgacgcaacccggaagtgcgggggagttaactccccgtggggcgaactttgaccaatgggagacaggagacgggagggagccgggcagataaattccctctccttccctccctccatggactgttccgaggcacggtttctccgtacagcctgtccggagacgtcccgcgtggccgagcggatgcacctgccgagcgaccggctgtgtctcttcgcggctcgtcgtgaagcngtggccagcncggtaacgcatcaccttgcattgcttcccntccttccctgcctcacttcccttttccctcactctcgctgccctgggattgcacctcccaaataaagcattagcacntaanctttgcctcaggctctgttttctagggaacccgggctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 35 99.0 Highly correlated
2 ZNF263 31 180.0 Weakly correlated
3 ZNF766 20 43.0 Weakly correlated
4 ZFP37 18 99.0 Highly correlated
5 ZNF705D 13 28.9 Weakly correlated
6 ZNF705B 10 28.9 Weakly correlated
7 ZNF317 10 99.0 Highly correlated
8 ZNF2 9 99.0 Highly correlated
9 ZNF679 9 28.9 Weakly correlated
10 ZNF175 9 94.0 Moderately correlated
11 ZNF394 9 99.0 Highly correlated
12 ZNF680 8 28.9 Weakly correlated
13 ZNF589 8 28.9 Weakly correlated
14 ZNF18 6 160.0 Weakly correlated
15 ZNF479 6 6.4 Weakly correlated
16 ZKSCAN1 6 160.0 Weakly correlated
17 ZFP69B 6 99.0 Highly correlated
18 ZNF534 6 19.6 Weakly correlated
19 ZNF324 5 99.0 Highly correlated
20 ZNF584 5 99.0 Highly correlated
21 ZNF554 5 99.0 Highly correlated
22 ZNF257 5 0.0 Weakly correlated
23 ZNF101 5 43.0 Weakly correlated
24 ZNF274 4 99.0 Highly correlated
25 ZNF701 4 28.9 Weakly correlated
26 ZNF558 4 99.0 Highly correlated
27 ZNF320 3 28.9 Weakly correlated
28 ZNF331 3 94.0 Moderately correlated
29 ZKSCAN8 3 160.0 Weakly correlated
30 ZIM3 3 87.0 Moderately correlated
31 ZFP57 3 87.0 Moderately correlated
32 ZNF8 2 99.0 Highly correlated
33 ZNF707 2 74.0 Weakly correlated
34 ZNF75D 2 94.0 Moderately correlated
35 ZNF778 2 74.0 Weakly correlated
36 ZNF793 2 99.0 Highly correlated
37 ZNF610 2 28.9 Weakly correlated
38 ZNF823 2 43.0 Weakly correlated
39 ZNF251 2 94.0 Moderately correlated
40 ZKSCAN5 2 160.0 Weakly correlated
41 ZNF133 2 99.0 Highly correlated
42 ZNF169 2 94.0 Moderately correlated
43 ZNF202 2 160.0 Weakly correlated
44 ZNF519 2 19.6 Weakly correlated
45 ZNF429 2 28.9 Weakly correlated
46 ZNF485 2 94.0 Moderately correlated
47 ZNF197 1 99.0 Highly correlated
48 ZNF528 1 43.0 Weakly correlated
49 ZNF114 1 28.9 Weakly correlated
50 ZNF490 1 43.0 Weakly correlated
51 ZNF792 1 94.0 Moderately correlated
52 ZNF141 1 43.0 Weakly correlated
53 ZNF549 1 87.0 Moderately correlated
54 ZNF182 1 99.0 Highly correlated
55 ZNF735 1 28.9 Weakly correlated
56 ZNF723 1 15.2 Weakly correlated
57 ZNF716 1 19.6 Weakly correlated
58 ZNF585A 1 99.0 Highly correlated
59 ZNF486 1 8.6 Weakly correlated
60 ZNF224 1 69.0 Weakly correlated
61 ZNF684 1 99.0 Highly correlated
62 ZNF28 1 28.9 Weakly correlated
63 ZNF30 1 94.0 Moderately correlated
64 ZNF671 1 94.0 Moderately correlated
65 ZNF44 1 43.0 Weakly correlated
66 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 6 180.0 Weakly correlated
2 ZNF554 3 99.0 Highly correlated
3 ZNF705D 3 28.9 Weakly correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZFP37 2 99.0 Highly correlated
7 ZNF589 2 28.9 Weakly correlated
8 ZNF705B 2 28.9 Weakly correlated
9 ZNF257 2 0.0 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZIM3 2 87.0 Moderately correlated
12 ZNF793 2 99.0 Highly correlated
13 ZNF202 1 160.0 Weakly correlated
14 ZNF823 1 43.0 Weakly correlated
15 ZNF429 1 28.9 Weakly correlated
16 ZNF684 1 99.0 Highly correlated
17 ZNF317 1 99.0 Highly correlated
18 ZNF585A 1 99.0 Highly correlated
19 ZNF440 1 28.9 Weakly correlated
20 ZNF382 1 99.0 Highly correlated
21 ZNF2 1 99.0 Highly correlated
22 ZNF679 1 28.9 Weakly correlated
23 ZNF175 1 94.0 Moderately correlated
24 ZNF141 1 43.0 Weakly correlated
25 ZKSCAN8 1 160.0 Weakly correlated
26 ZKSCAN5 1 160.0 Weakly correlated
27 ZKSCAN1 1 160.0 Weakly correlated
28 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated