ZRdb KZFP & Repeats
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LTR_LTR16C

  • Name
    LTR16C
  • Repbase
    LTR16C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000421
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagcagacgctgtcggtgccccgcccatatcccctcggcccttaccatttcagtgcacgccggcccgacttccaactgccagcacctgcatctctttgcctgagggctttctctggccgccggagcccgctctgcccacgcgcanggcaggccggaagtgccggggaattaacgccccccgggagcagccctcaaccaatgactgacgggagttggtgnataaataccccagctccctcgcccctcgggtgggataactctgaggcgcgtgttctacactgtctcccagagttccccagcgggattgagctccagttgcccacagtggtaacttgctcgataacgcaccctttattggctnccttcccttccctgtctcacttccccactcccctaccggtgtttcctgggatcacctcccaaataaactacttgcactcgaatccttgtctcagggtctgcttctgggggaacccaaactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF37A 230 99.0 Highly correlated
2 ZNF382 221 99.0 Highly correlated
3 ZNF263 145 180.0 Weakly correlated
4 ZNF766 123 43.0 Weakly correlated
5 ZNF479 119 6.4 Weakly correlated
6 ZNF679 69 28.9 Weakly correlated
7 ZNF394 54 99.0 Highly correlated
8 ZNF589 50 28.9 Weakly correlated
9 ZIM3 49 87.0 Moderately correlated
10 ZKSCAN1 42 160.0 Weakly correlated
11 ZNF680 40 28.9 Weakly correlated
12 ZFP37 39 99.0 Highly correlated
13 ZNF2 39 99.0 Highly correlated
14 ZNF175 37 94.0 Moderately correlated
15 ZKSCAN8 36 160.0 Weakly correlated
16 ZNF584 36 99.0 Highly correlated
17 ZNF534 35 19.6 Weakly correlated
18 ZNF701 34 28.9 Weakly correlated
19 ZNF317 30 99.0 Highly correlated
20 ZNF793 29 99.0 Highly correlated
21 ZNF18 28 160.0 Weakly correlated
22 ZNF705B 23 28.9 Weakly correlated
23 ZNF197 22 99.0 Highly correlated
24 ZNF320 22 28.9 Weakly correlated
25 ZNF554 22 99.0 Highly correlated
26 ZFP69B 21 99.0 Highly correlated
27 ZNF257 21 0.0 Weakly correlated
28 ZNF723 20 15.2 Weakly correlated
29 ZNF597 18 94.0 Moderately correlated
30 ZNF75D 16 94.0 Moderately correlated
31 ZNF324 15 99.0 Highly correlated
32 ZNF485 15 94.0 Moderately correlated
33 ZNF528 15 43.0 Weakly correlated
34 ZNF274 13 99.0 Highly correlated
35 ZNF251 12 94.0 Moderately correlated
36 ZNF567 12 99.0 Highly correlated
37 ZNF610 12 28.9 Weakly correlated
38 ZNF101 11 43.0 Weakly correlated
39 ZNF28 11 28.9 Weakly correlated
40 ZNF92 11 28.9 Weakly correlated
41 ZKSCAN5 10 160.0 Weakly correlated
42 ZNF331 10 94.0 Moderately correlated
43 ZNF506 10 28.9 Weakly correlated
44 ZNF558 10 99.0 Highly correlated
45 ZNF707 10 74.0 Weakly correlated
46 ZNF705D 9 28.9 Weakly correlated
47 ZNF140 8 99.0 Highly correlated
48 ZNF490 8 43.0 Weakly correlated
49 ZNF682 8 28.9 Weakly correlated
50 ZNF425 7 94.0 Moderately correlated
51 ZNF436 7 180.0 Weakly correlated
52 ZNF441 7 43.0 Weakly correlated
53 ZNF547 7 74.0 Weakly correlated
54 ZNF778 7 74.0 Weakly correlated
55 ZNF347 6 43.0 Weakly correlated
56 ZNF674 6 99.0 Highly correlated
57 ZNF735 6 28.9 Weakly correlated
58 ZNF133 5 99.0 Highly correlated
59 ZNF141 5 43.0 Weakly correlated
60 ZNF282 5 319.0 Weakly correlated
61 ZNF429 5 28.9 Weakly correlated
62 ZNF44 5 43.0 Weakly correlated
63 ZNF468 5 28.9 Weakly correlated
64 ZNF483 5 99.0 Highly correlated
65 ZNF585B 5 99.0 Highly correlated
66 ZNF695 5 28.9 Weakly correlated
67 ZFP57 4 87.0 Moderately correlated
68 ZNF264 4 99.0 Highly correlated
69 ZNF519 4 19.6 Weakly correlated
70 ZNF563 4 28.9 Weakly correlated
71 ZNF684 4 99.0 Highly correlated
72 ZNF792 4 94.0 Moderately correlated
73 ZNF808 4 19.6 Weakly correlated
74 ZNF816 4 28.9 Weakly correlated
75 ZNF157 3 99.0 Highly correlated
76 ZNF26 3 99.0 Highly correlated
77 ZNF471 3 94.0 Moderately correlated
78 ZNF486 3 8.6 Weakly correlated
79 ZNF549 3 87.0 Moderately correlated
80 ZNF786 3 99.0 Highly correlated
81 ZNF823 3 43.0 Weakly correlated
82 ZNF8 3 99.0 Highly correlated
83 ZNF91 3 6.0 Weakly correlated
84 ZFP28 2 99.0 Highly correlated
85 ZFP82 2 99.0 Highly correlated
86 ZNF248 2 99.0 Highly correlated
87 ZNF273 2 28.9 Weakly correlated
88 ZNF41 2 99.0 Highly correlated
89 ZNF480 2 43.0 Weakly correlated
90 ZNF573 2 94.0 Moderately correlated
91 ZNF585A 2 99.0 Highly correlated
92 ZNF605 2 99.0 Highly correlated
93 ZNF641 2 99.0 Highly correlated
94 ZNF667 2 99.0 Highly correlated
95 ZNF669 2 43.0 Weakly correlated
96 ZNF677 2 99.0 Highly correlated
97 ZNF716 2 19.6 Weakly correlated
98 ZNF736 2 43.0 Weakly correlated
99 ZNF780A 2 43.0 Weakly correlated
100 ZFP30 1 99.0 Highly correlated
101 ZNF100 1 28.9 Weakly correlated
102 ZNF12 1 99.0 Highly correlated
103 ZNF154 1 94.0 Moderately correlated
104 ZNF180 1 99.0 Highly correlated
105 ZNF182 1 99.0 Highly correlated
106 ZNF189 1 99.0 Highly correlated
107 ZNF202 1 160.0 Weakly correlated
108 ZNF222 1 43.0 Weakly correlated
109 ZNF284 1 43.0 Weakly correlated
110 ZNF337 1 43.0 Weakly correlated
111 ZNF343 1 74.0 Weakly correlated
112 ZNF417 1 28.9 Weakly correlated
113 ZNF433 1 43.0 Weakly correlated
114 ZNF510 1 99.0 Highly correlated
115 ZNF530 1 28.9 Weakly correlated
116 ZNF562 1 28.9 Weakly correlated
117 ZNF577 1 94.0 Moderately correlated
118 ZNF616 1 43.0 Weakly correlated
119 ZNF649 1 28.9 Weakly correlated
120 ZNF658 1 99.0 Highly correlated
121 ZNF681 1 28.9 Weakly correlated
122 ZNF700 1 28.9 Weakly correlated
123 ZNF730 1 19.6 Weakly correlated
124 ZNF75A 1 94.0 Moderately correlated
125 ZNF789 1 99.0 Highly correlated
126 ZNF84 1 99.0 Highly correlated
127 ZNF85 1 28.9 Weakly correlated
128 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF37A 222 99.0 Highly correlated
2 ZNF479 68 6.4 Weakly correlated
3 ZNF263 49 180.0 Weakly correlated
4 ZNF534 20 19.6 Weakly correlated
5 ZNF793 15 99.0 Highly correlated
6 ZIM3 14 87.0 Moderately correlated
7 ZNF680 10 28.9 Weakly correlated
8 ZNF506 10 28.9 Weakly correlated
9 ZNF679 10 28.9 Weakly correlated
10 ZNF485 9 94.0 Moderately correlated
11 ZNF766 9 43.0 Weakly correlated
12 ZNF257 9 0.0 Weakly correlated
13 ZNF567 9 99.0 Highly correlated
14 ZNF18 8 160.0 Weakly correlated
15 ZNF589 8 28.9 Weakly correlated
16 ZKSCAN5 8 160.0 Weakly correlated
17 ZNF75D 7 94.0 Moderately correlated
18 ZNF701 7 28.9 Weakly correlated
19 ZNF382 6 99.0 Highly correlated
20 ZNF175 5 94.0 Moderately correlated
21 ZNF320 5 28.9 Weakly correlated
22 ZNF674 5 99.0 Highly correlated
23 ZNF584 5 99.0 Highly correlated
24 ZKSCAN8 4 160.0 Weakly correlated
25 ZNF197 4 99.0 Highly correlated
26 ZNF347 4 43.0 Weakly correlated
27 ZNF483 4 99.0 Highly correlated
28 ZNF468 4 28.9 Weakly correlated
29 ZNF558 4 99.0 Highly correlated
30 ZNF554 3 99.0 Highly correlated
31 ZNF2 3 99.0 Highly correlated
32 ZNF44 3 43.0 Weakly correlated
33 ZNF490 3 43.0 Weakly correlated
34 ZNF251 3 94.0 Moderately correlated
35 ZNF707 3 74.0 Weakly correlated
36 ZNF141 3 43.0 Weakly correlated
37 ZNF101 3 43.0 Weakly correlated
38 ZNF282 3 319.0 Weakly correlated
39 ZNF723 3 15.2 Weakly correlated
40 ZNF735 2 28.9 Weakly correlated
41 ZNF133 2 99.0 Highly correlated
42 ZFP57 2 87.0 Moderately correlated
43 ZNF816 2 28.9 Weakly correlated
44 ZKSCAN1 2 160.0 Weakly correlated
45 ZNF597 2 94.0 Moderately correlated
46 ZNF28 2 28.9 Weakly correlated
47 ZNF585B 2 99.0 Highly correlated
48 ZNF549 2 87.0 Moderately correlated
49 ZNF682 2 28.9 Weakly correlated
50 ZNF317 2 99.0 Highly correlated
51 ZNF528 2 43.0 Weakly correlated
52 ZNF780A 2 43.0 Weakly correlated
53 ZFP37 1 99.0 Highly correlated
54 ZNF573 1 94.0 Moderately correlated
55 ZNF605 1 99.0 Highly correlated
56 ZNF616 1 43.0 Weakly correlated
57 ZNF264 1 99.0 Highly correlated
58 ZNF337 1 43.0 Weakly correlated
59 ZNF140 1 99.0 Highly correlated
60 ZNF436 1 180.0 Weakly correlated
61 ZNF684 1 99.0 Highly correlated
62 ZNF433 1 43.0 Weakly correlated
63 ZNF530 1 28.9 Weakly correlated
64 ZNF667 1 99.0 Highly correlated
65 ZNF716 1 19.6 Weakly correlated
66 ZNF75A 1 94.0 Moderately correlated
67 ZNF808 1 19.6 Weakly correlated
68 ZNF248 1 99.0 Highly correlated
69 ZNF471 1 94.0 Moderately correlated
70 ZNF641 1 99.0 Highly correlated
71 ZNF677 1 99.0 Highly correlated
72 ZNF778 1 74.0 Weakly correlated
73 ZNF331 1 94.0 Moderately correlated
74 ZNF519 1 19.6 Weakly correlated
75 ZNF823 1 43.0 Weakly correlated
76 ZNF563 1 28.9 Weakly correlated
77 ZNF789 1 99.0 Highly correlated
78 ZNF425 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF18 160.0 Weakly correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF485 94.0 Moderately correlated
5 ZNF589 28.9 Weakly correlated
6 ZNF75D 94.0 Moderately correlated
7 ZNF793 99.0 Highly correlated