ZRdb KZFP & Repeats
...

LTR_LTR16B2

  • Name
    LTR16B2
  • Repbase
    LTR16B2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000420
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcggccatgagaatgcgcctctcagatctccnactgcagggagcgtaattgaccganggccccagctgctgcgctctgaatccatcaccgcgtttgcgccgaggccacgcttcccacgggctgctcccagccaatgactgagcgcggcagggatactaaggcaggcccgttcctgggagacgcgggactcctctgacgggcgactttggctcgaggactccccgncggccttgccgaancttccttagaactgcacngcagtctaagacgcttcctacccaaccttccttccttccctctctccttcacnggggtcagacctgcatcgcggtctgacggctctcccagcctcctccggctccctccccattttccctcacaggcgtttcccctaataaatctcttgcacgtttaatcccgtcttggcgtctgcttctcggaggacccggactaacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 54 99.0 Highly correlated
2 ZNF263 53 180.0 Weakly correlated
3 ZNF705B 41 28.9 Weakly correlated
4 ZNF705D 30 28.9 Weakly correlated
5 ZNF18 16 160.0 Weakly correlated
6 ZNF132 14 94.0 Moderately correlated
7 ZFP37 13 99.0 Highly correlated
8 ZNF394 12 99.0 Highly correlated
9 ZNF766 12 43.0 Weakly correlated
10 ZNF175 12 94.0 Moderately correlated
11 ZNF2 11 99.0 Highly correlated
12 ZNF479 11 6.4 Weakly correlated
13 ZNF317 11 99.0 Highly correlated
14 ZNF534 10 19.6 Weakly correlated
15 ZNF793 10 99.0 Highly correlated
16 ZNF75D 10 94.0 Moderately correlated
17 ZKSCAN1 9 160.0 Weakly correlated
18 ZNF680 8 28.9 Weakly correlated
19 ZNF679 8 28.9 Weakly correlated
20 ZNF589 8 28.9 Weakly correlated
21 ZIM3 8 87.0 Moderately correlated
22 ZFP69B 8 99.0 Highly correlated
23 ZNF584 7 99.0 Highly correlated
24 ZFP57 7 87.0 Moderately correlated
25 ZNF324 6 99.0 Highly correlated
26 ZNF554 6 99.0 Highly correlated
27 ZNF528 6 43.0 Weakly correlated
28 ZNF425 5 94.0 Moderately correlated
29 ZNF506 5 28.9 Weakly correlated
30 ZNF723 5 15.2 Weakly correlated
31 ZNF485 5 94.0 Moderately correlated
32 ZNF169 5 94.0 Moderately correlated
33 ZNF274 5 99.0 Highly correlated
34 ZNF251 4 94.0 Moderately correlated
35 ZNF320 4 28.9 Weakly correlated
36 ZNF257 4 0.0 Weakly correlated
37 ZNF610 4 28.9 Weakly correlated
38 ZKSCAN8 4 160.0 Weakly correlated
39 ZNF701 4 28.9 Weakly correlated
40 ZNF133 3 99.0 Highly correlated
41 ZNF547 3 74.0 Weakly correlated
42 ZNF140 3 99.0 Highly correlated
43 ZNF75A 3 94.0 Moderately correlated
44 ZNF429 3 28.9 Weakly correlated
45 ZNF8 3 99.0 Highly correlated
46 ZNF93 3 8.6 Weakly correlated
47 ZNF585B 2 99.0 Highly correlated
48 ZNF101 2 43.0 Weakly correlated
49 ZNF674 2 99.0 Highly correlated
50 ZKSCAN5 2 160.0 Weakly correlated
51 ZNF823 2 43.0 Weakly correlated
52 ZNF197 2 99.0 Highly correlated
53 ZNF224 2 69.0 Weakly correlated
54 ZNF549 2 87.0 Moderately correlated
55 ZNF41 2 99.0 Highly correlated
56 ZNF28 2 28.9 Weakly correlated
57 ZNF490 2 43.0 Weakly correlated
58 ZNF782 1 99.0 Highly correlated
59 ZNF114 1 28.9 Weakly correlated
60 ZNF441 1 43.0 Weakly correlated
61 ZNF735 1 28.9 Weakly correlated
62 ZNF440 1 28.9 Weakly correlated
63 ZNF100 1 28.9 Weakly correlated
64 ZNF433 1 43.0 Weakly correlated
65 ZNF780A 1 43.0 Weakly correlated
66 ZNF483 1 99.0 Highly correlated
67 ZNF792 1 94.0 Moderately correlated
68 ZNF808 1 19.6 Weakly correlated
69 ZNF816 1 28.9 Weakly correlated
70 ZNF334 1 99.0 Highly correlated
71 ZNF92 1 28.9 Weakly correlated
72 ZNF343 1 74.0 Weakly correlated
73 ZNF44 1 43.0 Weakly correlated
74 ZNF681 1 28.9 Weakly correlated
75 ZFP28 1 99.0 Highly correlated
76 ZNF160 1 74.0 Weakly correlated
77 ZNF675 1 8.6 Weakly correlated
78 ZNF486 1 8.6 Weakly correlated
79 ZNF611 1 19.6 Weakly correlated
80 ZNF607 1 43.0 Weakly correlated
81 ZNF597 1 94.0 Moderately correlated
82 ZNF519 1 19.6 Weakly correlated
83 ZNF33A 1 99.0 Highly correlated
84 ZNF182 1 99.0 Highly correlated
85 ZNF573 1 94.0 Moderately correlated
86 ZNF563 1 28.9 Weakly correlated
87 ZNF558 1 99.0 Highly correlated
88 ZNF550 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 17 180.0 Weakly correlated
2 ZNF705B 16 28.9 Weakly correlated
3 ZNF132 14 94.0 Moderately correlated
4 ZNF705D 12 28.9 Weakly correlated
5 ZNF534 7 19.6 Weakly correlated
6 ZNF479 7 6.4 Weakly correlated
7 ZNF506 4 28.9 Weakly correlated
8 ZNF793 4 99.0 Highly correlated
9 ZNF18 4 160.0 Weakly correlated
10 ZNF169 3 94.0 Moderately correlated
11 ZNF75D 3 94.0 Moderately correlated
12 ZFP57 2 87.0 Moderately correlated
13 ZNF429 2 28.9 Weakly correlated
14 ZNF382 2 99.0 Highly correlated
15 ZNF317 2 99.0 Highly correlated
16 ZNF485 2 94.0 Moderately correlated
17 ZIM3 2 87.0 Moderately correlated
18 ZNF28 1 28.9 Weakly correlated
19 ZNF2 1 99.0 Highly correlated
20 ZNF780A 1 43.0 Weakly correlated
21 ZNF257 1 0.0 Weakly correlated
22 ZNF274 1 99.0 Highly correlated
23 ZNF792 1 94.0 Moderately correlated
24 ZNF75A 1 94.0 Moderately correlated
25 ZNF554 1 99.0 Highly correlated
26 ZNF490 1 43.0 Weakly correlated
27 ZNF766 1 43.0 Weakly correlated
28 ZNF320 1 28.9 Weakly correlated
29 ZNF528 1 43.0 Weakly correlated
30 ZNF816 1 28.9 Weakly correlated
31 ZNF679 1 28.9 Weakly correlated
32 ZNF549 1 87.0 Moderately correlated
33 ZNF808 1 19.6 Weakly correlated
34 ZNF680 1 28.9 Weakly correlated
35 ZNF597 1 94.0 Moderately correlated
36 ZNF433 1 43.0 Weakly correlated
37 ZNF324 1 99.0 Highly correlated
38 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF132 94.0 Moderately correlated
2 ZNF705D 28.9 Weakly correlated