ZRdb KZFP & Repeats
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LTR_LTR16B1

  • Name
    LTR16B1
  • Repbase
    LTR16B1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000419
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcggccatggaggtgcgccgctcagatctcccttcaagagaacctgctgcggggagcgtagttggctgacagcctccagctgccgcaccttcggatccgccgcagcgttcacgccgaggccacgcttcccccgggctgctcccagccaatgactgagcacggcgggggtactagagccgggccattcctgcccgacgcgggactcctctaacgggcaatctttgctcngggactccccatcggcctggccgagactttctcagagctgcgctgcagtctgaggctcttcctacccaatcctccttccttccctctctcctttcacaggtgtcagacctgcatcgcggtctgaaggctctccctgcctactcctgctccctctcccctttatccttcacaggcgtttcccccaataaatctcttgcacgtctaattccgtcttggcgtctgcttctcggaggacccgaactgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 47 180.0 Weakly correlated
2 ZNF132 39 94.0 Moderately correlated
3 ZNF382 32 99.0 Highly correlated
4 ZNF766 19 43.0 Weakly correlated
5 ZNF680 17 28.9 Weakly correlated
6 ZNF534 16 19.6 Weakly correlated
7 ZNF274 13 99.0 Highly correlated
8 ZKSCAN1 11 160.0 Weakly correlated
9 ZNF679 9 28.9 Weakly correlated
10 ZNF394 8 99.0 Highly correlated
11 ZNF479 8 6.4 Weakly correlated
12 ZNF554 8 99.0 Highly correlated
13 ZNF317 8 99.0 Highly correlated
14 ZNF589 7 28.9 Weakly correlated
15 ZNF705B 7 28.9 Weakly correlated
16 ZNF705D 7 28.9 Weakly correlated
17 ZNF75D 7 94.0 Moderately correlated
18 ZNF549 6 87.0 Moderately correlated
19 ZNF18 6 160.0 Weakly correlated
20 ZFP37 5 99.0 Highly correlated
21 ZFP57 5 87.0 Moderately correlated
22 ZNF2 5 99.0 Highly correlated
23 ZFP69B 5 99.0 Highly correlated
24 ZNF682 5 28.9 Weakly correlated
25 ZNF723 4 15.2 Weakly correlated
26 ZNF485 4 94.0 Moderately correlated
27 ZNF793 4 99.0 Highly correlated
28 ZIM3 4 87.0 Moderately correlated
29 ZNF273 3 28.9 Weakly correlated
30 ZNF486 3 8.6 Weakly correlated
31 ZNF425 3 94.0 Moderately correlated
32 ZKSCAN8 3 160.0 Weakly correlated
33 ZNF101 3 43.0 Weakly correlated
34 ZNF684 3 99.0 Highly correlated
35 ZNF28 3 28.9 Weakly correlated
36 ZNF197 3 99.0 Highly correlated
37 ZNF251 3 94.0 Moderately correlated
38 ZNF92 2 28.9 Weakly correlated
39 ZNF808 2 19.6 Weakly correlated
40 ZNF610 2 28.9 Weakly correlated
41 ZNF597 2 94.0 Moderately correlated
42 ZNF701 2 28.9 Weakly correlated
43 ZNF778 2 74.0 Weakly correlated
44 ZNF584 2 99.0 Highly correlated
45 ZNF563 2 28.9 Weakly correlated
46 ZNF93 2 8.6 Weakly correlated
47 ZNF331 2 94.0 Moderately correlated
48 ZKSCAN5 2 160.0 Weakly correlated
49 ZNF510 2 99.0 Highly correlated
50 ZNF528 2 43.0 Weakly correlated
51 ZNF441 2 43.0 Weakly correlated
52 ZNF141 2 43.0 Weakly correlated
53 ZNF343 2 74.0 Weakly correlated
54 ZNF17 2 69.0 Weakly correlated
55 ZNF257 2 0.0 Weakly correlated
56 ZNF792 1 94.0 Moderately correlated
57 ZNF728 1 19.6 Weakly correlated
58 ZNF735 1 28.9 Weakly correlated
59 ZNF175 1 94.0 Moderately correlated
60 ZNF337 1 43.0 Weakly correlated
61 ZNF133 1 99.0 Highly correlated
62 ZNF813 1 28.9 Weakly correlated
63 ZFP28 1 99.0 Highly correlated
64 ZNF324 1 99.0 Highly correlated
65 ZNF333 1 99.0 Highly correlated
66 ZNF33A 1 99.0 Highly correlated
67 ZNF418 1 43.0 Weakly correlated
68 ZNF41 1 99.0 Highly correlated
69 ZNF674 1 99.0 Highly correlated
70 ZNF671 1 94.0 Moderately correlated
71 ZNF440 1 28.9 Weakly correlated
72 ZNF44 1 43.0 Weakly correlated
73 ZNF587 1 28.9 Weakly correlated
74 ZNF567 1 99.0 Highly correlated
75 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF132 39 94.0 Moderately correlated
2 ZNF263 17 180.0 Weakly correlated
3 ZNF534 8 19.6 Weakly correlated
4 ZNF680 7 28.9 Weakly correlated
5 ZNF766 6 43.0 Weakly correlated
6 ZNF485 4 94.0 Moderately correlated
7 ZNF549 4 87.0 Moderately correlated
8 ZNF75D 4 94.0 Moderately correlated
9 ZNF793 3 99.0 Highly correlated
10 ZNF705B 3 28.9 Weakly correlated
11 ZNF479 3 6.4 Weakly correlated
12 ZNF723 2 15.2 Weakly correlated
13 ZNF589 2 28.9 Weakly correlated
14 ZNF28 2 28.9 Weakly correlated
15 ZNF705D 2 28.9 Weakly correlated
16 ZNF684 2 99.0 Highly correlated
17 ZKSCAN5 2 160.0 Weakly correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZIM3 2 87.0 Moderately correlated
20 ZNF440 1 28.9 Weakly correlated
21 ZNF382 1 99.0 Highly correlated
22 ZNF2 1 99.0 Highly correlated
23 ZNF251 1 94.0 Moderately correlated
24 ZNF92 1 28.9 Weakly correlated
25 ZNF597 1 94.0 Moderately correlated
26 ZNF567 1 99.0 Highly correlated
27 ZNF18 1 160.0 Weakly correlated
28 ZNF735 1 28.9 Weakly correlated
29 ZNF554 1 99.0 Highly correlated
30 ZNF33A 1 99.0 Highly correlated
31 ZFP57 1 87.0 Moderately correlated
32 ZNF587 1 28.9 Weakly correlated
33 ZNF257 1 0.0 Weakly correlated
34 ZNF674 1 99.0 Highly correlated
35 ZNF671 1 94.0 Moderately correlated
36 ZNF197 1 99.0 Highly correlated
37 ZNF141 1 43.0 Weakly correlated
38 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF132 94.0 Moderately correlated