ZRdb KZFP & Repeats
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LTR_LTR16B

  • Name
    LTR16B
  • Repbase
    LTR16B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000418
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcggccatgaaaatgcgccgctcagatctcctgctgcggggagcatagttgactgacggccccagctgctgcccctctggatccaccaccgcgttcgcgccgaggccacgcttcccncgggctgctcccagccaatgactgagcacggcgggggtactaatgcaggcccattcctgcgagacgcgggactcctctaacgggcgactttggctcgaggactccccatcggcctggccgaaactttcttagaactgcgctgcagtctgagactcttcctacccaatcctccttccttccccctctccttcacaggtgtcagacctgcatcgcggtctgaaggctctccctgcctnctcctgctccctcccctttatccttcacaggcgtttcccccaataaatctcttgcacgtctaatcccgtcttggcgtctgcttctcggaggacccgaactaacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Highly correlated
2 ZNF263 23 180.0 Weakly correlated
3 ZNF680 18 28.9 Weakly correlated
4 ZNF75D 13 94.0 Moderately correlated
5 ZNF132 12 94.0 Moderately correlated
6 ZNF317 9 99.0 Highly correlated
7 ZNF554 6 99.0 Highly correlated
8 ZNF394 6 99.0 Highly correlated
9 ZNF18 6 160.0 Weakly correlated
10 ZFP37 5 99.0 Highly correlated
11 ZNF320 5 28.9 Weakly correlated
12 ZNF2 5 99.0 Highly correlated
13 ZNF175 5 94.0 Moderately correlated
14 ZNF793 4 99.0 Highly correlated
15 ZIM3 4 87.0 Moderately correlated
16 ZNF28 4 28.9 Weakly correlated
17 ZNF101 4 43.0 Weakly correlated
18 ZNF766 3 43.0 Weakly correlated
19 ZNF589 3 28.9 Weakly correlated
20 ZFP69B 3 99.0 Highly correlated
21 ZNF479 3 6.4 Weakly correlated
22 ZNF324 3 99.0 Highly correlated
23 ZNF597 2 94.0 Moderately correlated
24 ZNF705D 2 28.9 Weakly correlated
25 ZKSCAN1 2 160.0 Weakly correlated
26 ZNF274 2 99.0 Highly correlated
27 ZNF273 2 28.9 Weakly correlated
28 ZNF584 2 99.0 Highly correlated
29 ZNF701 2 28.9 Weakly correlated
30 ZNF610 2 28.9 Weakly correlated
31 ZNF684 2 99.0 Highly correlated
32 ZNF695 1 28.9 Weakly correlated
33 ZNF792 1 94.0 Moderately correlated
34 ZNF611 1 19.6 Weakly correlated
35 ZNF8 1 99.0 Highly correlated
36 ZNF616 1 43.0 Weakly correlated
37 ZNF679 1 28.9 Weakly correlated
38 ZNF736 1 43.0 Weakly correlated
39 ZFP30 1 99.0 Highly correlated
40 ZNF700 1 28.9 Weakly correlated
41 ZNF705B 1 28.9 Weakly correlated
42 ZNF707 1 74.0 Weakly correlated
43 ZNF879 1 99.0 Highly correlated
44 ZNF485 1 94.0 Moderately correlated
45 ZKSCAN8 1 160.0 Weakly correlated
46 ZNF133 1 99.0 Highly correlated
47 ZNF182 1 99.0 Highly correlated
48 ZNF197 1 99.0 Highly correlated
49 ZNF248 1 99.0 Highly correlated
50 ZNF251 1 94.0 Moderately correlated
51 ZNF257 1 0.0 Weakly correlated
52 ZNF334 1 99.0 Highly correlated
53 ZNF354A 1 99.0 Highly correlated
54 ZNF563 1 28.9 Weakly correlated
55 ZNF490 1 43.0 Weakly correlated
56 ZNF510 1 99.0 Highly correlated
57 ZNF519 1 19.6 Weakly correlated
58 ZNF530 1 28.9 Weakly correlated
59 ZNF534 1 19.6 Weakly correlated
60 ZNF547 1 74.0 Weakly correlated
61 ZNF549 1 87.0 Moderately correlated
62 ZNF558 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF132 12 94.0 Moderately correlated
2 ZNF263 9 180.0 Weakly correlated
3 ZNF75D 7 94.0 Moderately correlated
4 ZNF680 5 28.9 Weakly correlated
5 ZNF28 3 28.9 Weakly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF793 2 99.0 Highly correlated
8 ZNF320 2 28.9 Weakly correlated
9 ZNF479 2 6.4 Weakly correlated
10 ZNF534 1 19.6 Weakly correlated
11 ZNF684 1 99.0 Highly correlated
12 ZNF382 1 99.0 Highly correlated
13 ZNF273 1 28.9 Weakly correlated
14 ZNF589 1 28.9 Weakly correlated
15 ZNF485 1 94.0 Moderately correlated
16 ZFP37 1 99.0 Highly correlated
17 ZNF736 1 43.0 Weakly correlated
18 ZNF695 1 28.9 Weakly correlated
19 ZNF563 1 28.9 Weakly correlated
20 ZNF554 1 99.0 Highly correlated
21 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF132 94.0 Moderately correlated
2 ZNF75D 94.0 Moderately correlated