ZRdb KZFP & Repeats
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LTR_LTR16A2

  • Name
    LTR16A2
  • Repbase
    LTR16A2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000417
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagcggacactgtcggtgcccgcccagatcccctcggatcccttttaccgtttctgtgcgccccttccccagcttctgtgtgcttttgcttctaacggcccgcacctgcgactcttttcggaggactgccctcgggctactggagccgctttgcccgcatgcagagagccggaagtgcctgggagtttatgncctctttccctccagggcggcccttagccaatgactgactggtgcgggagtatgaaagcccagctcccttgcctcgagtcgggacaaactctgaggcgtaatttacactccagagctcccctgcgggatcaggctgaagctgggactttgcctgaaatcgcacccttgcttggcttcttccccttccctgtcctgcttccccactcccttaccggtttctcctgggagcacttccttaataaatcacttgcacacgaatcctcgtctcagggtctgcttctggggaacccgacctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 88 99.0 Highly correlated
2 ZNF263 76 180.0 Weakly correlated
3 ZNF766 34 43.0 Weakly correlated
4 ZNF18 25 160.0 Weakly correlated
5 ZNF567 19 99.0 Highly correlated
6 ZNF317 16 99.0 Highly correlated
7 ZNF394 16 99.0 Highly correlated
8 ZNF589 16 28.9 Weakly correlated
9 ZKSCAN1 15 160.0 Weakly correlated
10 ZNF479 15 6.4 Weakly correlated
11 ZNF257 14 0.0 Weakly correlated
12 ZNF2 14 99.0 Highly correlated
13 ZFP69B 14 99.0 Highly correlated
14 ZNF175 14 94.0 Moderately correlated
15 ZNF701 13 28.9 Weakly correlated
16 ZFP37 12 99.0 Highly correlated
17 ZNF680 11 28.9 Weakly correlated
18 ZNF534 11 19.6 Weakly correlated
19 ZNF679 11 28.9 Weakly correlated
20 ZNF793 10 99.0 Highly correlated
21 ZNF197 9 99.0 Highly correlated
22 ZNF75D 8 94.0 Moderately correlated
23 ZNF101 8 43.0 Weakly correlated
24 ZNF554 7 99.0 Highly correlated
25 ZNF324 7 99.0 Highly correlated
26 ZNF705B 6 28.9 Weakly correlated
27 ZNF584 6 99.0 Highly correlated
28 ZNF320 6 28.9 Weakly correlated
29 ZNF558 5 99.0 Highly correlated
30 ZNF92 5 28.9 Weakly correlated
31 ZIM3 5 87.0 Moderately correlated
32 ZNF610 5 28.9 Weakly correlated
33 ZNF425 4 94.0 Moderately correlated
34 ZNF251 4 94.0 Moderately correlated
35 ZKSCAN8 4 160.0 Weakly correlated
36 ZNF549 3 87.0 Moderately correlated
37 ZNF93 3 8.6 Weakly correlated
38 ZNF28 3 28.9 Weakly correlated
39 ZNF705D 3 28.9 Weakly correlated
40 ZNF778 3 74.0 Weakly correlated
41 ZKSCAN5 3 160.0 Weakly correlated
42 ZNF597 2 94.0 Moderately correlated
43 ZNF682 2 28.9 Weakly correlated
44 ZNF563 2 28.9 Weakly correlated
45 ZNF684 2 99.0 Highly correlated
46 ZNF786 2 99.0 Highly correlated
47 ZNF490 2 43.0 Weakly correlated
48 ZNF224 2 69.0 Weakly correlated
49 ZNF483 2 99.0 Highly correlated
50 ZNF471 2 94.0 Moderately correlated
51 ZNF273 2 28.9 Weakly correlated
52 ZNF274 2 99.0 Highly correlated
53 ZNF282 2 319.0 Weakly correlated
54 ZNF140 2 99.0 Highly correlated
55 ZNF37A 2 99.0 Highly correlated
56 ZNF169 1 94.0 Moderately correlated
57 ZNF723 1 15.2 Weakly correlated
58 ZNF727 1 19.6 Weakly correlated
59 ZNF736 1 43.0 Weakly correlated
60 ZNF182 1 99.0 Highly correlated
61 ZNF765 1 8.6 Weakly correlated
62 ZNF17 1 69.0 Weakly correlated
63 ZNF777 1 319.0 Weakly correlated
64 ZFP57 1 87.0 Moderately correlated
65 ZNF792 1 94.0 Moderately correlated
66 ZNF133 1 99.0 Highly correlated
67 ZNF808 1 19.6 Weakly correlated
68 ZNF823 1 43.0 Weakly correlated
69 ZNF879 1 99.0 Highly correlated
70 ZNF91 1 6.0 Weakly correlated
71 ZNF12 1 99.0 Highly correlated
72 ZNF519 1 19.6 Weakly correlated
73 ZNF585B 1 99.0 Highly correlated
74 ZNF528 1 43.0 Weakly correlated
75 ZNF506 1 28.9 Weakly correlated
76 ZNF485 1 94.0 Moderately correlated
77 ZNF470 1 99.0 Highly correlated
78 ZNF468 1 28.9 Weakly correlated
79 ZNF573 1 94.0 Moderately correlated
80 ZNF445 1 99.0 Highly correlated
81 ZNF585A 1 99.0 Highly correlated
82 ZNF264 1 99.0 Highly correlated
83 ZNF436 1 180.0 Weakly correlated
84 ZNF605 1 99.0 Highly correlated
85 ZNF347 1 43.0 Weakly correlated
86 ZNF626 1 0.0 Weakly correlated
87 ZNF641 1 99.0 Highly correlated
88 ZNF304 1 99.0 Highly correlated
89 ZNF695 1 28.9 Weakly correlated
90 ZNF26 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 35 180.0 Weakly correlated
2 ZNF567 17 99.0 Highly correlated
3 ZNF479 7 6.4 Weakly correlated
4 ZNF257 6 0.0 Weakly correlated
5 ZNF18 6 160.0 Weakly correlated
6 ZNF793 5 99.0 Highly correlated
7 ZNF680 5 28.9 Weakly correlated
8 ZNF317 5 99.0 Highly correlated
9 ZNF534 5 19.6 Weakly correlated
10 ZNF766 5 43.0 Weakly correlated
11 ZIM3 3 87.0 Moderately correlated
12 ZNF75D 3 94.0 Moderately correlated
13 ZNF2 3 99.0 Highly correlated
14 ZNF382 2 99.0 Highly correlated
15 ZNF701 2 28.9 Weakly correlated
16 ZNF471 2 94.0 Moderately correlated
17 ZNF554 2 99.0 Highly correlated
18 ZNF324 2 99.0 Highly correlated
19 ZNF37A 2 99.0 Highly correlated
20 ZNF778 1 74.0 Weakly correlated
21 ZFP37 1 99.0 Highly correlated
22 ZNF641 1 99.0 Highly correlated
23 ZNF468 1 28.9 Weakly correlated
24 ZNF133 1 99.0 Highly correlated
25 ZNF175 1 94.0 Moderately correlated
26 ZKSCAN1 1 160.0 Weakly correlated
27 ZNF589 1 28.9 Weakly correlated
28 ZNF549 1 87.0 Moderately correlated
29 ZKSCAN5 1 160.0 Weakly correlated
30 ZNF273 1 28.9 Weakly correlated
31 ZNF485 1 94.0 Moderately correlated
32 ZNF585A 1 99.0 Highly correlated
33 ZNF282 1 319.0 Weakly correlated
34 ZNF573 1 94.0 Moderately correlated
35 ZNF347 1 43.0 Weakly correlated
36 ZNF197 1 99.0 Highly correlated
37 ZNF605 1 99.0 Highly correlated
38 ZNF736 1 43.0 Weakly correlated
39 ZNF483 1 99.0 Highly correlated
40 ZNF684 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated