ZRdb KZFP & Repeats
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LTR_LTR16A1

  • Name
    LTR16A1
  • Repbase
    LTR16A1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000416
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtagatgctgttggtgccccgcccagatcccctttaccgggccggtgcacccatcccccagctgctgtgagtgttggctgctaacggctcacagctgcccccttctccggagaattgccctcggccgacgggagccgcctcgcctgggaggttaccccccaccgggcagcccgcagccaatgactgactgatacgggggtacaaaaggccggcccccttgcctcaaggtgggacaactcactctgtggtgcaattcatgctccagagctccccgtgggatcaggctgaggctagacttcagctgagaccacatccttgcttagcttcttcccctgccctatcctgcttccctcactcccttacaggtttctcctgagagcactccctcaataaatcacttgcacaagaatccccgtctcaggctctgcttctagggaacccgacctaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 170 99.0 Highly correlated
2 ZNF263 98 180.0 Weakly correlated
3 ZNF766 51 43.0 Weakly correlated
4 ZNF394 38 99.0 Highly correlated
5 ZNF257 35 0.0 Weakly correlated
6 ZFP37 32 99.0 Highly correlated
7 ZNF18 27 160.0 Weakly correlated
8 ZNF2 27 99.0 Highly correlated
9 ZKSCAN1 25 160.0 Weakly correlated
10 ZNF317 25 99.0 Highly correlated
11 ZNF479 22 6.4 Weakly correlated
12 ZFP69B 21 99.0 Highly correlated
13 ZNF554 19 99.0 Highly correlated
14 ZNF324 18 99.0 Highly correlated
15 ZNF680 18 28.9 Weakly correlated
16 ZIM3 17 87.0 Moderately correlated
17 ZNF534 17 19.6 Weakly correlated
18 ZNF589 17 28.9 Weakly correlated
19 ZNF101 16 43.0 Weakly correlated
20 ZNF175 16 94.0 Moderately correlated
21 ZNF705B 16 28.9 Weakly correlated
22 ZNF320 15 28.9 Weakly correlated
23 ZNF558 15 99.0 Highly correlated
24 ZKSCAN8 14 160.0 Weakly correlated
25 ZNF610 12 28.9 Weakly correlated
26 ZNF679 12 28.9 Weakly correlated
27 ZNF701 12 28.9 Weakly correlated
28 ZNF584 11 99.0 Highly correlated
29 ZNF197 10 99.0 Highly correlated
30 ZNF28 10 28.9 Weakly correlated
31 ZNF425 10 94.0 Moderately correlated
32 ZNF528 10 43.0 Weakly correlated
33 ZNF705D 9 28.9 Weakly correlated
34 ZNF723 8 15.2 Weakly correlated
35 ZNF75D 8 94.0 Moderately correlated
36 ZKSCAN5 7 160.0 Weakly correlated
37 ZNF486 7 8.6 Weakly correlated
38 ZNF519 7 19.6 Weakly correlated
39 ZNF92 7 28.9 Weakly correlated
40 ZNF549 6 87.0 Moderately correlated
41 ZNF597 6 94.0 Moderately correlated
42 ZNF707 6 74.0 Weakly correlated
43 ZNF735 6 28.9 Weakly correlated
44 ZNF792 6 94.0 Moderately correlated
45 ZNF264 5 99.0 Highly correlated
46 ZNF274 5 99.0 Highly correlated
47 ZNF429 5 28.9 Weakly correlated
48 ZNF506 5 28.9 Weakly correlated
49 ZNF567 5 99.0 Highly correlated
50 ZNF778 5 74.0 Weakly correlated
51 ZNF793 5 99.0 Highly correlated
52 ZNF133 4 99.0 Highly correlated
53 ZNF251 4 94.0 Moderately correlated
54 ZNF331 4 94.0 Moderately correlated
55 ZNF343 4 74.0 Weakly correlated
56 ZNF350 4 99.0 Highly correlated
57 ZNF695 4 28.9 Weakly correlated
58 ZNF347 3 43.0 Weakly correlated
59 ZNF485 3 94.0 Moderately correlated
60 ZNF677 3 99.0 Highly correlated
61 ZNF765 3 8.6 Weakly correlated
62 ZNF91 3 6.0 Weakly correlated
63 ZNF141 2 43.0 Weakly correlated
64 ZNF222 2 43.0 Weakly correlated
65 ZNF282 2 319.0 Weakly correlated
66 ZNF334 2 99.0 Highly correlated
67 ZNF41 2 99.0 Highly correlated
68 ZNF468 2 28.9 Weakly correlated
69 ZNF490 2 43.0 Weakly correlated
70 ZNF547 2 74.0 Weakly correlated
71 ZNF585B 2 99.0 Highly correlated
72 ZNF605 2 99.0 Highly correlated
73 ZNF682 2 28.9 Weakly correlated
74 ZNF684 2 99.0 Highly correlated
75 ZNF93 2 8.6 Weakly correlated
76 RBAK 1 99.0 Highly correlated
77 ZFP14 1 99.0 Highly correlated
78 ZFP57 1 87.0 Moderately correlated
79 ZFP69 1 99.0 Highly correlated
80 ZNF124 1 43.0 Weakly correlated
81 ZNF132 1 94.0 Moderately correlated
82 ZNF157 1 99.0 Highly correlated
83 ZNF182 1 99.0 Highly correlated
84 ZNF202 1 160.0 Weakly correlated
85 ZNF273 1 28.9 Weakly correlated
86 ZNF284 1 43.0 Weakly correlated
87 ZNF287 1 99.0 Highly correlated
88 ZNF304 1 99.0 Highly correlated
89 ZNF33A 1 99.0 Highly correlated
90 ZNF354C 1 99.0 Highly correlated
91 ZNF383 1 99.0 Highly correlated
92 ZNF436 1 180.0 Weakly correlated
93 ZNF441 1 43.0 Weakly correlated
94 ZNF44 1 43.0 Weakly correlated
95 ZNF471 1 94.0 Moderately correlated
96 ZNF480 1 43.0 Weakly correlated
97 ZNF483 1 99.0 Highly correlated
98 ZNF530 1 28.9 Weakly correlated
99 ZNF557 1 15.2 Weakly correlated
100 ZNF573 1 94.0 Moderately correlated
101 ZNF585A 1 99.0 Highly correlated
102 ZNF671 1 94.0 Moderately correlated
103 ZNF674 1 99.0 Highly correlated
104 ZNF727 1 19.6 Weakly correlated
105 ZNF75A 1 94.0 Moderately correlated
106 ZNF780A 1 43.0 Weakly correlated
107 ZNF786 1 99.0 Highly correlated
108 ZNF808 1 19.6 Weakly correlated
109 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 38 180.0 Weakly correlated
2 ZNF257 24 0.0 Weakly correlated
3 ZNF534 11 19.6 Weakly correlated
4 ZNF554 8 99.0 Highly correlated
5 ZFP37 8 99.0 Highly correlated
6 ZIM3 6 87.0 Moderately correlated
7 ZNF320 5 28.9 Weakly correlated
8 ZKSCAN5 4 160.0 Weakly correlated
9 ZNF766 4 43.0 Weakly correlated
10 ZNF567 4 99.0 Highly correlated
11 ZNF723 3 15.2 Weakly correlated
12 ZNF317 3 99.0 Highly correlated
13 ZNF479 3 6.4 Weakly correlated
14 ZNF382 3 99.0 Highly correlated
15 ZNF705B 3 28.9 Weakly correlated
16 ZNF133 3 99.0 Highly correlated
17 ZNF707 3 74.0 Weakly correlated
18 ZNF589 2 28.9 Weakly correlated
19 ZNF735 2 28.9 Weakly correlated
20 ZNF558 2 99.0 Highly correlated
21 ZNF28 2 28.9 Weakly correlated
22 ZNF347 2 43.0 Weakly correlated
23 ZNF468 2 28.9 Weakly correlated
24 ZNF506 2 28.9 Weakly correlated
25 ZNF528 2 43.0 Weakly correlated
26 ZNF75D 2 94.0 Moderately correlated
27 ZNF490 2 43.0 Weakly correlated
28 ZNF2 2 99.0 Highly correlated
29 ZNF18 2 160.0 Weakly correlated
30 ZFP69B 2 99.0 Highly correlated
31 ZNF679 1 28.9 Weakly correlated
32 ZNF530 1 28.9 Weakly correlated
33 ZNF705D 1 28.9 Weakly correlated
34 ZNF597 1 94.0 Moderately correlated
35 ZNF350 1 99.0 Highly correlated
36 ZNF549 1 87.0 Moderately correlated
37 ZNF585A 1 99.0 Highly correlated
38 ZNF674 1 99.0 Highly correlated
39 ZNF677 1 99.0 Highly correlated
40 ZNF429 1 28.9 Weakly correlated
41 ZNF573 1 94.0 Moderately correlated
42 ZNF519 1 19.6 Weakly correlated
43 ZNF485 1 94.0 Moderately correlated
44 ZNF334 1 99.0 Highly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF33A 1 99.0 Highly correlated
47 ZNF44 1 43.0 Weakly correlated
48 ZNF331 1 94.0 Moderately correlated
49 ZNF175 1 94.0 Moderately correlated
50 ZNF684 1 99.0 Highly correlated
51 ZNF141 1 43.0 Weakly correlated
52 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF554 99.0 Highly correlated