ZRdb KZFP & Repeats
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LTR_LTR16A

  • Name
    LTR16A
  • Repbase
    LTR16A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000415
Description :

A retroviral LTR. The internal sequence is closely related to that ofHERVL. 5 bp duplication sites.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtggacgctgtgatgcgccgcccagatcccccttcaggantgaaggacttattcccccagctgctgggagtgctgccggcagacagccctcagctgtcagccctcttcggggattgcctcagctgaagagagccgcctcgcccaaggtcacgcccccttcccggggcagcccgcatccaatgactgatcgatgcgggggtataaaggcccggccccctcgccccaactcgggacaactctgaagggccatcccagctccagagctccccgtggggtcggctgaggccttcgttgggactgcatcgcagctcaacttctccctctgcccaatcctgcttccttcccttcccttccacaggtgttgatcccaagagcactccctaataaacntcctgcacgctaatctccgtctcagagtctgcttcccggggaacccaacctgcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 163 180.0 Weakly correlated
2 ZNF382 155 99.0 Highly correlated
3 ZNF766 91 43.0 Weakly correlated
4 ZNF479 61 6.4 Weakly correlated
5 ZNF394 49 99.0 Highly correlated
6 ZIM3 47 87.0 Moderately correlated
7 ZFP37 30 99.0 Highly correlated
8 ZNF2 30 99.0 Highly correlated
9 ZNF317 29 99.0 Highly correlated
10 ZNF679 29 28.9 Weakly correlated
11 ZNF680 28 28.9 Weakly correlated
12 ZNF705B 27 28.9 Weakly correlated
13 ZKSCAN1 25 160.0 Weakly correlated
14 ZNF18 25 160.0 Weakly correlated
15 ZNF589 22 28.9 Weakly correlated
16 ZNF534 21 19.6 Weakly correlated
17 ZNF175 18 94.0 Moderately correlated
18 ZNF101 17 43.0 Weakly correlated
19 ZNF257 16 0.0 Weakly correlated
20 ZNF610 15 28.9 Weakly correlated
21 ZNF324 14 99.0 Highly correlated
22 ZNF701 14 28.9 Weakly correlated
23 ZNF274 13 99.0 Highly correlated
24 ZNF705D 13 28.9 Weakly correlated
25 ZFP69B 12 99.0 Highly correlated
26 ZNF723 12 15.2 Weakly correlated
27 ZKSCAN8 11 160.0 Weakly correlated
28 ZNF707 11 74.0 Weakly correlated
29 ZNF140 9 99.0 Highly correlated
30 ZNF197 9 99.0 Highly correlated
31 ZNF558 9 99.0 Highly correlated
32 ZNF584 9 99.0 Highly correlated
33 ZNF793 9 99.0 Highly correlated
34 ZNF554 8 99.0 Highly correlated
35 ZNF486 7 8.6 Weakly correlated
36 ZNF506 7 28.9 Weakly correlated
37 ZNF549 7 87.0 Moderately correlated
38 ZNF93 7 8.6 Weakly correlated
39 ZFP28 6 99.0 Highly correlated
40 ZNF320 6 28.9 Weakly correlated
41 ZNF485 6 94.0 Moderately correlated
42 ZNF519 6 19.6 Weakly correlated
43 ZNF547 6 74.0 Weakly correlated
44 ZNF490 5 43.0 Weakly correlated
45 ZNF528 5 43.0 Weakly correlated
46 ZNF585B 5 99.0 Highly correlated
47 ZNF682 5 28.9 Weakly correlated
48 ZNF684 5 99.0 Highly correlated
49 ZNF75D 5 94.0 Moderately correlated
50 ZNF91 5 6.0 Weakly correlated
51 ZNF92 5 28.9 Weakly correlated
52 ZNF251 4 94.0 Moderately correlated
53 ZNF273 4 28.9 Weakly correlated
54 ZNF343 4 74.0 Weakly correlated
55 ZNF425 4 94.0 Moderately correlated
56 ZNF483 4 99.0 Highly correlated
57 ZNF563 4 28.9 Weakly correlated
58 ZNF573 4 94.0 Moderately correlated
59 ZNF597 4 94.0 Moderately correlated
60 ZNF735 4 28.9 Weakly correlated
61 ZNF792 4 94.0 Moderately correlated
62 ZNF8 4 99.0 Highly correlated
63 ZFP57 3 87.0 Moderately correlated
64 ZKSCAN5 3 160.0 Weakly correlated
65 ZNF141 3 43.0 Weakly correlated
66 ZNF169 3 94.0 Moderately correlated
67 ZNF264 3 99.0 Highly correlated
68 ZNF28 3 28.9 Weakly correlated
69 ZNF337 3 43.0 Weakly correlated
70 ZNF347 3 43.0 Weakly correlated
71 ZNF461 3 99.0 Highly correlated
72 ZNF471 3 94.0 Moderately correlated
73 ZNF674 3 99.0 Highly correlated
74 ZNF799 3 43.0 Weakly correlated
75 ZNF133 2 99.0 Highly correlated
76 ZNF136 2 74.0 Weakly correlated
77 ZNF189 2 99.0 Highly correlated
78 ZNF202 2 160.0 Weakly correlated
79 ZNF248 2 99.0 Highly correlated
80 ZNF282 2 319.0 Weakly correlated
81 ZNF331 2 94.0 Moderately correlated
82 ZNF33A 2 99.0 Highly correlated
83 ZNF429 2 28.9 Weakly correlated
84 ZNF441 2 43.0 Weakly correlated
85 ZNF44 2 43.0 Weakly correlated
86 ZNF749 2 28.9 Weakly correlated
87 ZNF777 2 319.0 Weakly correlated
88 ZNF778 2 74.0 Weakly correlated
89 ZNF823 2 43.0 Weakly correlated
90 PRDM9 1 0.0 Weakly correlated
91 ZFP69 1 99.0 Highly correlated
92 ZFP90 1 99.0 Highly correlated
93 ZNF114 1 28.9 Weakly correlated
94 ZNF12 1 99.0 Highly correlated
95 ZNF132 1 94.0 Moderately correlated
96 ZNF157 1 99.0 Highly correlated
97 ZNF184 1 99.0 Highly correlated
98 ZNF19 1 99.0 Highly correlated
99 ZNF205 1 180.0 Weakly correlated
100 ZNF234 1 99.0 Highly correlated
101 ZNF26 1 99.0 Highly correlated
102 ZNF284 1 43.0 Weakly correlated
103 ZNF287 1 99.0 Highly correlated
104 ZNF302 1 43.0 Weakly correlated
105 ZNF350 1 99.0 Highly correlated
106 ZNF37A 1 99.0 Highly correlated
107 ZNF418 1 43.0 Weakly correlated
108 ZNF41 1 99.0 Highly correlated
109 ZNF420 1 94.0 Moderately correlated
110 ZNF436 1 180.0 Weakly correlated
111 ZNF445 1 99.0 Highly correlated
112 ZNF468 1 28.9 Weakly correlated
113 ZNF496 1 99.0 Highly correlated
114 ZNF544 1 0.0 Weakly correlated
115 ZNF559 1 74.0 Weakly correlated
116 ZNF562 1 28.9 Weakly correlated
117 ZNF582 1 99.0 Highly correlated
118 ZNF585A 1 99.0 Highly correlated
119 ZNF587 1 28.9 Weakly correlated
120 ZNF607 1 43.0 Weakly correlated
121 ZNF616 1 43.0 Weakly correlated
122 ZNF641 1 99.0 Highly correlated
123 ZNF675 1 8.6 Weakly correlated
124 ZNF677 1 99.0 Highly correlated
125 ZNF75A 1 94.0 Moderately correlated
126 ZNF761 1 19.6 Weakly correlated
127 ZNF780A 1 43.0 Weakly correlated
128 ZNF786 1 99.0 Highly correlated
129 ZNF789 1 99.0 Highly correlated
130 ZNF816 1 28.9 Weakly correlated
131 ZNF845 1 28.9 Weakly correlated
132 ZNF84 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 64 180.0 Weakly correlated
2 ZNF479 24 6.4 Weakly correlated
3 ZNF766 19 43.0 Weakly correlated
4 ZIM3 17 87.0 Moderately correlated
5 ZNF534 11 19.6 Weakly correlated
6 ZNF679 7 28.9 Weakly correlated
7 ZNF382 7 99.0 Highly correlated
8 ZFP37 5 99.0 Highly correlated
9 ZNF317 5 99.0 Highly correlated
10 ZNF680 5 28.9 Weakly correlated
11 ZNF257 5 0.0 Weakly correlated
12 ZNF528 4 43.0 Weakly correlated
13 ZNF705B 4 28.9 Weakly correlated
14 ZNF684 4 99.0 Highly correlated
15 ZNF793 3 99.0 Highly correlated
16 ZNF610 3 28.9 Weakly correlated
17 ZFP28 3 99.0 Highly correlated
18 ZNF573 3 94.0 Moderately correlated
19 ZKSCAN1 3 160.0 Weakly correlated
20 ZNF723 3 15.2 Weakly correlated
21 ZNF485 3 94.0 Moderately correlated
22 ZKSCAN5 3 160.0 Weakly correlated
23 ZNF490 3 43.0 Weakly correlated
24 ZNF549 3 87.0 Moderately correlated
25 ZNF554 3 99.0 Highly correlated
26 ZNF735 2 28.9 Weakly correlated
27 ZNF674 2 99.0 Highly correlated
28 ZNF18 2 160.0 Weakly correlated
29 ZNF589 2 28.9 Weakly correlated
30 ZNF749 2 28.9 Weakly correlated
31 ZNF347 2 43.0 Weakly correlated
32 ZNF506 2 28.9 Weakly correlated
33 ZNF28 2 28.9 Weakly correlated
34 ZNF75D 2 94.0 Moderately correlated
35 ZNF597 1 94.0 Moderately correlated
36 ZFP57 1 87.0 Moderately correlated
37 ZNF701 1 28.9 Weakly correlated
38 ZNF563 1 28.9 Weakly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZNF132 1 94.0 Moderately correlated
41 ZNF816 1 28.9 Weakly correlated
42 ZNF705D 1 28.9 Weakly correlated
43 ZNF140 1 99.0 Highly correlated
44 ZNF133 1 99.0 Highly correlated
45 ZNF519 1 19.6 Weakly correlated
46 ZNF33A 1 99.0 Highly correlated
47 ZNF483 1 99.0 Highly correlated
48 ZNF677 1 99.0 Highly correlated
49 ZNF320 1 28.9 Weakly correlated
50 ZNF582 1 99.0 Highly correlated
51 ZNF273 1 28.9 Weakly correlated
52 ZNF468 1 28.9 Weakly correlated
53 ZNF175 1 94.0 Moderately correlated
54 ZNF799 1 43.0 Weakly correlated
55 ZNF823 1 43.0 Weakly correlated
56 ZNF37A 1 99.0 Highly correlated
57 ZNF91 1 6.0 Weakly correlated
58 ZNF607 1 43.0 Weakly correlated
59 ZNF584 1 99.0 Highly correlated
60 ZNF248 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated