ZRdb KZFP & Repeats
...

LTR_LTR16

  • Name
    LTR16
  • Repbase
    LTR16
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000414
Description :

Found at orthologous sites in all eutherians, and absent frommarsupials and monotremes.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtggatgctgtggtgcgccgcccagatcgnnccccccttcaggaccgaggcactcattcccccagctgccgggagtgttggctgctgacggctcncagctgagtccctctccgggaattgccctcggccgaagggagctgcctcgcccaaggttacgcccccttcccgggggcagcccgcatccaatgactggtcgatgcgggggtacaaaggcctcagtcctcaattcgggacaactctgaagggccatcccagctccagagctccccgtgggatcggctgaggcctctgttgcgactgcatcgcagttcaacttctccctctgcccaatcctgcttccttcactccctcacaggtgttgntcccgagagcactccccaataaacctcctgcacgcaaatctccgtctcagagtctgtttcccggggaaccca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 134 99.0 Highly correlated
2 ZNF263 118 180.0 Weakly correlated
3 ZNF766 47 43.0 Weakly correlated
4 ZNF394 30 99.0 Highly correlated
5 ZNF479 29 6.4 Weakly correlated
6 ZFP37 25 99.0 Highly correlated
7 ZNF175 22 94.0 Moderately correlated
8 ZNF257 22 0.0 Weakly correlated
9 ZNF679 22 28.9 Weakly correlated
10 ZNF705B 20 28.9 Weakly correlated
11 ZIM3 19 87.0 Moderately correlated
12 ZKSCAN1 18 160.0 Weakly correlated
13 ZNF2 18 99.0 Highly correlated
14 ZNF461 17 99.0 Highly correlated
15 ZNF317 16 99.0 Highly correlated
16 ZNF589 16 28.9 Weakly correlated
17 ZNF534 14 19.6 Weakly correlated
18 ZNF680 13 28.9 Weakly correlated
19 ZNF701 13 28.9 Weakly correlated
20 ZNF705D 13 28.9 Weakly correlated
21 ZKSCAN8 11 160.0 Weakly correlated
22 ZNF18 10 160.0 Weakly correlated
23 ZNF584 10 99.0 Highly correlated
24 ZNF274 9 99.0 Highly correlated
25 ZNF684 8 99.0 Highly correlated
26 ZNF735 8 28.9 Weakly correlated
27 ZNF324 7 99.0 Highly correlated
28 ZNF554 7 99.0 Highly correlated
29 ZNF597 7 94.0 Moderately correlated
30 ZNF197 6 99.0 Highly correlated
31 ZNF251 6 94.0 Moderately correlated
32 ZNF273 6 28.9 Weakly correlated
33 ZNF320 6 28.9 Weakly correlated
34 ZNF485 6 94.0 Moderately correlated
35 ZNF490 6 43.0 Weakly correlated
36 ZNF528 6 43.0 Weakly correlated
37 ZFP69B 5 99.0 Highly correlated
38 ZNF723 5 15.2 Weakly correlated
39 ZNF101 4 43.0 Weakly correlated
40 ZNF133 4 99.0 Highly correlated
41 ZNF169 4 94.0 Moderately correlated
42 ZNF425 4 94.0 Moderately correlated
43 ZNF506 4 28.9 Weakly correlated
44 ZNF549 4 87.0 Moderately correlated
45 ZNF558 4 99.0 Highly correlated
46 ZNF585A 4 99.0 Highly correlated
47 ZNF75D 4 94.0 Moderately correlated
48 ZNF792 4 94.0 Moderately correlated
49 ZNF28 3 28.9 Weakly correlated
50 ZNF419 3 28.9 Weakly correlated
51 ZNF468 3 28.9 Weakly correlated
52 ZNF610 3 28.9 Weakly correlated
53 ZNF641 3 99.0 Highly correlated
54 ZNF682 3 28.9 Weakly correlated
55 ZNF707 3 74.0 Weakly correlated
56 ZNF136 2 74.0 Weakly correlated
57 ZNF140 2 99.0 Highly correlated
58 ZNF141 2 43.0 Weakly correlated
59 ZNF248 2 99.0 Highly correlated
60 ZNF282 2 319.0 Weakly correlated
61 ZNF33A 2 99.0 Highly correlated
62 ZNF433 2 43.0 Weakly correlated
63 ZNF436 2 180.0 Weakly correlated
64 ZNF441 2 43.0 Weakly correlated
65 ZNF486 2 8.6 Weakly correlated
66 ZNF510 2 99.0 Highly correlated
67 ZNF519 2 19.6 Weakly correlated
68 ZNF563 2 28.9 Weakly correlated
69 ZNF578 2 15.2 Weakly correlated
70 ZNF671 2 94.0 Moderately correlated
71 ZNF695 2 28.9 Weakly correlated
72 ZNF793 2 99.0 Highly correlated
73 ZNF808 2 19.6 Weakly correlated
74 ZNF823 2 43.0 Weakly correlated
75 ZNF850 2 28.9 Weakly correlated
76 ZNF8 2 99.0 Highly correlated
77 ZFP57 1 87.0 Moderately correlated
78 ZFP90 1 99.0 Highly correlated
79 ZKSCAN5 1 160.0 Weakly correlated
80 ZNF17 1 69.0 Weakly correlated
81 ZNF182 1 99.0 Highly correlated
82 ZNF189 1 99.0 Highly correlated
83 ZNF283 1 99.0 Highly correlated
84 ZNF284 1 43.0 Weakly correlated
85 ZNF333 1 99.0 Highly correlated
86 ZNF337 1 43.0 Weakly correlated
87 ZNF350 1 99.0 Highly correlated
88 ZNF354A 1 99.0 Highly correlated
89 ZNF383 1 99.0 Highly correlated
90 ZNF41 1 99.0 Highly correlated
91 ZNF439 1 8.6 Weakly correlated
92 ZNF44 1 43.0 Weakly correlated
93 ZNF471 1 94.0 Moderately correlated
94 ZNF483 1 99.0 Highly correlated
95 ZNF547 1 74.0 Weakly correlated
96 ZNF573 1 94.0 Moderately correlated
97 ZNF577 1 94.0 Moderately correlated
98 ZNF585B 1 99.0 Highly correlated
99 ZNF605 1 99.0 Highly correlated
100 ZNF700 1 28.9 Weakly correlated
101 ZNF75A 1 94.0 Moderately correlated
102 ZNF786 1 99.0 Highly correlated
103 ZNF845 1 28.9 Weakly correlated
104 ZNF860 1 0.0 Weakly correlated
105 ZNF91 1 6.0 Weakly correlated
106 ZNF92 1 28.9 Weakly correlated
107 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 41 180.0 Weakly correlated
2 ZNF257 12 0.0 Weakly correlated
3 ZIM3 10 87.0 Moderately correlated
4 ZNF479 10 6.4 Weakly correlated
5 ZNF766 9 43.0 Weakly correlated
6 ZNF382 7 99.0 Highly correlated
7 ZNF735 6 28.9 Weakly correlated
8 ZNF534 6 19.6 Weakly correlated
9 ZNF684 6 99.0 Highly correlated
10 ZFP37 5 99.0 Highly correlated
11 ZNF2 4 99.0 Highly correlated
12 ZNF485 4 94.0 Moderately correlated
13 ZNF320 3 28.9 Weakly correlated
14 ZNF679 3 28.9 Weakly correlated
15 ZNF317 3 99.0 Highly correlated
16 ZNF680 3 28.9 Weakly correlated
17 ZNF251 3 94.0 Moderately correlated
18 ZNF705B 3 28.9 Weakly correlated
19 ZNF554 3 99.0 Highly correlated
20 ZNF75D 2 94.0 Moderately correlated
21 ZNF468 2 28.9 Weakly correlated
22 ZNF133 2 99.0 Highly correlated
23 ZNF141 2 43.0 Weakly correlated
24 ZNF705D 2 28.9 Weakly correlated
25 ZNF528 2 43.0 Weakly correlated
26 ZNF433 2 43.0 Weakly correlated
27 ZNF597 2 94.0 Moderately correlated
28 ZNF671 1 94.0 Moderately correlated
29 ZNF483 1 99.0 Highly correlated
30 ZNF793 1 99.0 Highly correlated
31 ZNF701 1 28.9 Weakly correlated
32 ZNF549 1 87.0 Moderately correlated
33 ZNF350 1 99.0 Highly correlated
34 ZNF723 1 15.2 Weakly correlated
35 ZNF610 1 28.9 Weakly correlated
36 ZNF490 1 43.0 Weakly correlated
37 ZNF283 1 99.0 Highly correlated
38 ZKSCAN5 1 160.0 Weakly correlated
39 ZNF44 1 43.0 Weakly correlated
40 ZNF33A 1 99.0 Highly correlated
41 ZNF510 1 99.0 Highly correlated
42 ZNF585A 1 99.0 Highly correlated
43 ZNF558 1 99.0 Highly correlated
44 ZNF641 1 99.0 Highly correlated
45 ZNF573 1 94.0 Moderately correlated
46 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF257 0.0 Weakly correlated