ZRdb KZFP & Repeats
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LTR_LTR15

  • Name
    LTR15
  • Repbase
    LTR15
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000413
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tggaacaggaattaaaagaaattaaagaatgtgtaagcagaaactcagttgtatgtaagaaaacccaattccccctgaggaagagaaagagctggagtcctttaaaaattaactgcctgtttttccgnntgtggctagtgagccttatctctccctttcccaggcattgtgaagaccctgtttctctagctgtgcagctgcaaggtcactagacagataaactcaagtcgtaaaacatgtttttccttgaaaagtaagaaatgatgtaatgcatgtctcaattgaataactgtctttgtttctcgcttctgtaatatgcttccccctgcacagatctccccccncgccccacgaaatgcttaaaaggtaacttgactctttgttcggggctcagtcctttggatgttaatccgactgggccggtgcacctaaataataaatanntcctcctcaaccccatcggtctctctgattcctnaattatcccgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 88 43.0 Weakly correlated
2 ZNF589 52 28.9 Highly correlated
3 ZNF175 41 94.0 Weakly correlated
4 ZKSCAN8 37 160.0 Weakly correlated
5 ZNF197 36 99.0 Weakly correlated
6 ZNF584 33 99.0 Weakly correlated
7 ZNF382 22 99.0 Weakly correlated
8 ZNF2 11 99.0 Weakly correlated
9 ZNF394 10 99.0 Weakly correlated
10 ZNF845 9 28.9 Highly correlated
11 ZFP69B 7 99.0 Weakly correlated
12 ZFP37 7 99.0 Weakly correlated
13 ZNF18 7 160.0 Weakly correlated
14 ZKSCAN1 6 160.0 Weakly correlated
15 ZNF324 5 99.0 Weakly correlated
16 ZNF274 4 99.0 Weakly correlated
17 ZNF558 4 99.0 Weakly correlated
18 ZNF610 4 28.9 Highly correlated
19 ZNF486 3 8.6 Weakly correlated
20 ZNF101 3 43.0 Weakly correlated
21 ZNF597 3 94.0 Weakly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF251 2 94.0 Weakly correlated
24 ZNF793 2 99.0 Weakly correlated
25 ZNF792 2 94.0 Weakly correlated
26 ZNF554 2 99.0 Weakly correlated
27 ZNF707 1 74.0 Weakly correlated
28 ZNF93 1 8.6 Weakly correlated
29 ZNF786 1 99.0 Weakly correlated
30 ZNF701 1 28.9 Highly correlated
31 ZNF679 1 28.9 Highly correlated
32 ZNF534 1 19.6 Moderately correlated
33 ZNF506 1 28.9 Highly correlated
34 ZNF483 1 99.0 Weakly correlated
35 ZNF479 1 6.4 Weakly correlated
36 ZNF441 1 43.0 Weakly correlated
37 ZNF33A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 26 28.9 Highly correlated
2 ZNF175 21 94.0 Weakly correlated
3 ZNF197 20 99.0 Weakly correlated
4 ZNF584 15 99.0 Weakly correlated
5 ZNF101 1 43.0 Weakly correlated
6 ZKSCAN8 1 160.0 Weakly correlated
7 ZNF610 1 28.9 Highly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF506 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Highly correlated