ZRdb KZFP & Repeats
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LTR_LTR14C

  • Name
    LTR14C
  • Repbase
    LTR14C
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000412
Description :

Copies present at orthologous sites in old world monkeys, but absentfrom new world monkeys.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggaaagagagtttctggggtgccagntgagttggtctcccctgtgtgagacacccatggggagccatgggcggcctctgaggagaaaagtctccttattgccttcatgtctttatgccccgagagcataaccgctcagcggcattccacaggttgctcagggagataacactcccttgaagcagtggagtataatcaaacatcttggctcctcctgaaacccgctcccacccgtttcagtcccgataagttaaagatcttaagtagtttagacacacgcctttgctcaaggaaattcacagaaaccgccactgctatacatcttatcgaatgactcacgagttctccttcactgattaatccttttcctcatcccttcctccccctcccatctgccctaagaacaaagagcttgtaaaccaataaattgggcggagcccgagagctctgggccgtgagcaagcctccgacgctccggtcccctggacccgccttttaaacgcttattctgtctctttctaactcctttgtctccgccggactcggggtacccgccgggtggtgtggggctggtttccccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF320 22 28.9 Highly correlated
2 ZNF479 19 6.4 Weakly correlated
3 ZNF28 17 28.9 Highly correlated
4 ZNF766 11 43.0 Weakly correlated
5 ZNF816 10 28.9 Highly correlated
6 ZNF587 6 28.9 Highly correlated
7 ZNF468 6 28.9 Highly correlated
8 ZNF92 5 28.9 Highly correlated
9 ZNF589 5 28.9 Highly correlated
10 ZNF417 5 28.9 Highly correlated
11 ZNF382 4 99.0 Weakly correlated
12 ZNF324 4 99.0 Weakly correlated
13 ZNF394 3 99.0 Weakly correlated
14 ZNF584 3 99.0 Weakly correlated
15 ZNF2 3 99.0 Weakly correlated
16 ZNF197 3 99.0 Weakly correlated
17 ZNF18 3 160.0 Weakly correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZNF793 2 99.0 Weakly correlated
20 ZNF175 2 94.0 Weakly correlated
21 ZNF534 2 19.6 Moderately correlated
22 ZNF701 2 28.9 Highly correlated
23 ZNF101 2 43.0 Weakly correlated
24 ZFP69B 1 99.0 Weakly correlated
25 ZNF317 1 99.0 Weakly correlated
26 ZKSCAN8 1 160.0 Weakly correlated
27 ZNF705B 1 28.9 Highly correlated
28 ZNF610 1 28.9 Highly correlated
29 ZNF12 1 99.0 Weakly correlated
30 ZNF160 1 74.0 Weakly correlated
31 ZNF549 1 87.0 Weakly correlated
32 ZNF547 1 74.0 Weakly correlated
33 ZNF519 1 19.6 Moderately correlated
34 ZNF486 1 8.6 Weakly correlated
35 ZFP37 1 99.0 Weakly correlated
36 ZNF263 1 180.0 Weakly correlated
37 ZNF274 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 15 28.9 Highly correlated
2 ZNF320 11 28.9 Highly correlated
3 ZNF816 6 28.9 Highly correlated
4 ZNF468 6 28.9 Highly correlated
5 ZNF417 4 28.9 Highly correlated
6 ZNF101 1 43.0 Weakly correlated
7 ZNF382 1 99.0 Weakly correlated
8 ZNF584 1 99.0 Weakly correlated
9 ZNF263 1 180.0 Weakly correlated
10 ZNF92 1 28.9 Highly correlated
11 ZNF197 1 99.0 Weakly correlated
12 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF28 28.9 Highly correlated
2 ZNF468 28.9 Highly correlated