ZRdb KZFP & Repeats
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LTR_LTR14B

  • Name
    LTR14B
  • Repbase
    LTR14B
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000411
Description :

Internal retroviral sequence has been found in GenBank sequence AC003100(position 20395-26285).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgggggaaaagctgagtgttgggagaagctgaggcagggcttgcatgtctgacataatgtaaaagagtcttggaacatgtccggggtccagggtctaaaacccctcgtggcctttggaacaccaagctctgtgctaaagggtggaaggctgccctgncgcaccataatctaagcccagggcataaaacccctcgtggcttggatagaatccagggctcgtggcctctggaatgtgtctagacttgctggctccttgcttctngctctcccaggatcgattgtatcttgagttaaaagaacctgctctccattatctcaagtagcagaacatgttccatatncgncgnnnnaaatgctaaaccgtcacagctgtagatcatgcgcttaatgcaacgcgccctttcgacccccacattctcaccacctgtttctttgttngatcaccaataaatagcgtgggctcccagagctcggggccttcgcagcctccatactcagcgntggccccctggncccactttctctctcaaactgtcttttctcantcctttgactccgccggacttcgtcgcccccacgacctggtgttgggtctgatcaccccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF320 499 28.9 Highly correlated
2 ZNF382 78 99.0 Weakly correlated
3 ZNF679 35 28.9 Highly correlated
4 ZNF793 34 99.0 Weakly correlated
5 ZNF394 33 99.0 Weakly correlated
6 ZNF18 16 160.0 Weakly correlated
7 ZNF263 15 180.0 Weakly correlated
8 ZFP37 12 99.0 Weakly correlated
9 ZNF610 12 28.9 Highly correlated
10 ZNF479 11 6.4 Weakly correlated
11 ZNF2 10 99.0 Weakly correlated
12 ZNF324 9 99.0 Weakly correlated
13 ZNF558 8 99.0 Weakly correlated
14 ZNF766 8 43.0 Weakly correlated
15 ZKSCAN5 7 160.0 Weakly correlated
16 ZNF101 6 43.0 Weakly correlated
17 ZNF429 6 28.9 Highly correlated
18 ZFP69B 6 99.0 Weakly correlated
19 ZNF554 5 99.0 Weakly correlated
20 ZNF519 5 19.6 Moderately correlated
21 ZNF251 5 94.0 Weakly correlated
22 ZFP57 5 87.0 Weakly correlated
23 ZNF28 5 28.9 Highly correlated
24 ZNF92 4 28.9 Highly correlated
25 ZNF417 4 28.9 Highly correlated
26 ZNF528 4 43.0 Weakly correlated
27 ZNF587 4 28.9 Highly correlated
28 ZNF257 4 0.0 Weakly correlated
29 ZNF317 3 99.0 Weakly correlated
30 ZNF701 3 28.9 Highly correlated
31 ZNF273 3 28.9 Highly correlated
32 ZNF44 3 43.0 Weakly correlated
33 ZNF584 3 99.0 Weakly correlated
34 ZNF202 3 160.0 Weakly correlated
35 ZNF197 3 99.0 Weakly correlated
36 ZNF552 2 28.9 Highly correlated
37 ZNF695 2 28.9 Highly correlated
38 ZNF605 2 99.0 Weakly correlated
39 ZNF589 2 28.9 Highly correlated
40 ZNF75D 2 94.0 Weakly correlated
41 ZNF585B 2 99.0 Weakly correlated
42 ZNF175 2 94.0 Weakly correlated
43 ZNF534 2 19.6 Moderately correlated
44 ZIM3 2 87.0 Weakly correlated
45 ZNF816 2 28.9 Highly correlated
46 ZNF891 2 99.0 Weakly correlated
47 ZFP14 1 99.0 Weakly correlated
48 ZNF791 1 87.0 Weakly correlated
49 ZNF778 1 74.0 Weakly correlated
50 ZNF792 1 94.0 Weakly correlated
51 ZKSCAN8 1 160.0 Weakly correlated
52 ZNF823 1 43.0 Weakly correlated
53 ZNF878 1 43.0 Weakly correlated
54 ZNF723 1 15.2 Moderately correlated
55 ZNF705E 1 0.0 Weakly correlated
56 ZNF705D 1 28.9 Highly correlated
57 ZNF705B 1 28.9 Highly correlated
58 ZNF347 1 43.0 Weakly correlated
59 ZNF563 1 28.9 Highly correlated
60 ZNF334 1 99.0 Weakly correlated
61 ZNF284 1 43.0 Weakly correlated
62 ZNF431 1 28.9 Highly correlated
63 ZNF468 1 28.9 Highly correlated
64 ZNF485 1 94.0 Weakly correlated
65 ZNF490 1 43.0 Weakly correlated
66 ZNF222 1 43.0 Weakly correlated
67 ZNF530 1 28.9 Highly correlated
68 ZNF682 1 28.9 Highly correlated
69 ZNF585A 1 99.0 Weakly correlated
70 ZNF157 1 99.0 Weakly correlated
71 ZNF136 1 74.0 Weakly correlated
72 ZNF674 1 99.0 Weakly correlated
73 ZNF677 1 99.0 Weakly correlated
74 ZNF135 1 94.0 Weakly correlated
75 ZNF680 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF320 176 28.9 Highly correlated
2 ZNF793 18 99.0 Weakly correlated
3 ZFP69B 2 99.0 Weakly correlated
4 ZNF263 2 180.0 Weakly correlated
5 ZNF44 2 43.0 Weakly correlated
6 ZNF324 2 99.0 Weakly correlated
7 ZNF2 2 99.0 Weakly correlated
8 ZNF534 2 19.6 Moderately correlated
9 ZNF251 2 94.0 Weakly correlated
10 ZNF417 2 28.9 Highly correlated
11 ZNF823 1 43.0 Weakly correlated
12 ZNF677 1 99.0 Weakly correlated
13 ZNF75D 1 94.0 Weakly correlated
14 ZNF257 1 0.0 Weakly correlated
15 ZNF585A 1 99.0 Weakly correlated
16 ZNF816 1 28.9 Highly correlated
17 ZIM3 1 87.0 Weakly correlated
18 ZNF347 1 43.0 Weakly correlated
19 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats