ZRdb KZFP & Repeats
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LTR_LTR14

  • Name
    LTR14
  • Repbase
    LTR14
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000409
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggaaaagggcttgtggggtgcctgtataaactggccataaaaatatgggacaataagttgtggaaagccacaagaggcctctgaggaggaaagcctcctaattgccatgctcagagcgagacccgctctctnntatctgtaaacactgtgttcaaggagaaagacactcctttgaagcactggaatgtggacagacgtgcaggctcctagttaagcccgctcccactagctactctccgataagttaaagatacgctgtttgagcacaaaggagattcatttaaaccgctattgctatagattacgcctatgacgcactgcctccctttcactgtttcgccctgaacatctgcttcttagatctaagtgattgtactcaataaatagtgtggagaccagagctctgngccttttgcagcctccattttgcaactggccccctggcccccactctttatgaactcttaacctgtctcttctcattcctttgtcgccaccggacttcgggtaccctacgggtggtgttgaggctggtccccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 46 28.9 Highly correlated
2 ZNF320 27 28.9 Highly correlated
3 ZNF766 21 43.0 Weakly correlated
4 ZNF18 11 160.0 Weakly correlated
5 ZKSCAN8 10 160.0 Weakly correlated
6 ZNF382 9 99.0 Weakly correlated
7 ZNF197 8 99.0 Weakly correlated
8 ZNF589 7 28.9 Highly correlated
9 ZKSCAN1 5 160.0 Weakly correlated
10 ZNF394 5 99.0 Weakly correlated
11 ZNF584 5 99.0 Weakly correlated
12 ZNF324 3 99.0 Weakly correlated
13 ZNF587 2 28.9 Highly correlated
14 ZNF175 2 94.0 Weakly correlated
15 ZNF251 2 94.0 Weakly correlated
16 ZNF263 2 180.0 Weakly correlated
17 ZNF610 2 28.9 Highly correlated
18 ZNF816 2 28.9 Highly correlated
19 ZNF510 2 99.0 Weakly correlated
20 ZNF671 1 94.0 Weakly correlated
21 ZNF92 1 28.9 Highly correlated
22 ZNF679 1 28.9 Highly correlated
23 ZNF780A 1 43.0 Weakly correlated
24 ZFP30 1 99.0 Weakly correlated
25 ZNF479 1 6.4 Weakly correlated
26 ZNF417 1 28.9 Highly correlated
27 ZNF2 1 99.0 Weakly correlated
28 ZNF274 1 99.0 Weakly correlated
29 ZNF257 1 0.0 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
31 ZNF101 1 43.0 Weakly correlated
32 ZFP69 1 99.0 Weakly correlated
33 ZFP69B 1 99.0 Weakly correlated
34 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 40 28.9 Highly correlated
2 ZNF320 11 28.9 Highly correlated
3 ZNF197 2 99.0 Weakly correlated
4 ZNF589 2 28.9 Highly correlated
5 ZNF584 2 99.0 Weakly correlated
6 ZKSCAN1 1 160.0 Weakly correlated
7 ZNF263 1 180.0 Weakly correlated
8 ZNF175 1 94.0 Weakly correlated
9 ZNF816 1 28.9 Highly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF417 1 28.9 Highly correlated
12 ZNF587 1 28.9 Highly correlated
13 ZNF92 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF28 28.9 Highly correlated