ZRdb KZFP & Repeats
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LTR_LTR13A

  • Name
    LTR13A
  • Repbase
    LTR13A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000408
Description :

Solo copies are flanked by 6 bp target site duplications.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggcggaggattacctaggtgccgaggcaagagactgaaggcacaaactgtttcagtataataaagaaaatagttagaataagaatagtcataatacaaattagatatagagatgatcatggacaattatcaatcattattataaacattattaatcattagcttttaatattactctttgttgcattactaatataacctaggaataaccggcgggtatagggtcaggtgctgaagggacattgtgagaagtgacctagaaggcaagaggtgagccctctgtcacgcccgcataagggccgcttgagggctccttggtcaagcggtaacgccagtgtctgggaaggcacccgttacttagcagaccgcgaaagggagtctcctttccttggaggagtcagggaacactctgctccaccagcttcttgtgggaggctggatattatccaggcctgcccgcagtcatccggaggcctaaacccctccctgtggtgctgtgcttcaatggtcacgctccttgtccactttcatgttcctcccgtactcctggttcctctttgaagttcgtagtagatagcggtagaagaaatagtgaaagtcttaaagtctttgatctttcttataagtgcatagaagaaaacgctgacgtatgctgccttctctctctgcttcggctacctaaaagggaagggccccctgtcccgtgatcacgtgacttgcttcaccttgtcaatcacttagaagattcaccctccttaccctgcccccttgtcttgtatgcaataaatatcagcgcgcccagccgttcggggccactaccggtctccgcgtcttgatggtagtggtcccccgggcccagctgttttctctttatctctttgtcttgtgtctttatttattacaatctctcgtctccgcacacggggagaacacccgctaagccccgtagggctggaccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 63 43.0 Weakly correlated
2 ZNF589 41 28.9 Highly correlated
3 ZKSCAN8 25 160.0 Weakly correlated
4 ZNF175 24 94.0 Weakly correlated
5 ZNF197 24 99.0 Weakly correlated
6 ZNF263 20 180.0 Weakly correlated
7 ZNF584 18 99.0 Weakly correlated
8 ZNF18 15 160.0 Weakly correlated
9 ZNF382 13 99.0 Weakly correlated
10 ZNF845 13 28.9 Highly correlated
11 ZKSCAN1 12 160.0 Weakly correlated
12 ZNF257 11 0.0 Weakly correlated
13 ZNF394 8 99.0 Weakly correlated
14 ZNF597 8 94.0 Weakly correlated
15 ZNF317 6 99.0 Weakly correlated
16 ZNF479 5 6.4 Weakly correlated
17 ZNF124 5 43.0 Weakly correlated
18 ZNF2 4 99.0 Weakly correlated
19 ZFP69B 4 99.0 Weakly correlated
20 ZNF224 3 69.0 Weakly correlated
21 ZNF324 3 99.0 Weakly correlated
22 ZFP37 3 99.0 Weakly correlated
23 ZNF558 3 99.0 Weakly correlated
24 ZNF528 3 43.0 Weakly correlated
25 ZNF93 2 8.6 Weakly correlated
26 ZNF534 2 19.6 Moderately correlated
27 ZFP57 2 87.0 Weakly correlated
28 ZNF101 2 43.0 Weakly correlated
29 ZNF274 2 99.0 Weakly correlated
30 ZNF605 1 99.0 Weakly correlated
31 ZNF114 1 28.9 Highly correlated
32 ZNF786 1 99.0 Weakly correlated
33 ZNF136 1 74.0 Weakly correlated
34 ZNF723 1 15.2 Moderately correlated
35 ZNF680 1 28.9 Highly correlated
36 ZNF679 1 28.9 Highly correlated
37 ZNF675 1 8.6 Weakly correlated
38 ZNF610 1 28.9 Highly correlated
39 ZNF44 1 43.0 Weakly correlated
40 ZNF251 1 94.0 Weakly correlated
41 ZNF425 1 94.0 Weakly correlated
42 ZNF429 1 28.9 Highly correlated
43 ZNF554 1 99.0 Weakly correlated
44 ZNF436 1 180.0 Weakly correlated
45 ZNF441 1 43.0 Weakly correlated
46 ZNF506 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 16 28.9 Highly correlated
2 ZNF197 12 99.0 Weakly correlated
3 ZNF175 11 94.0 Weakly correlated
4 ZNF257 9 0.0 Weakly correlated
5 ZNF584 8 99.0 Weakly correlated
6 ZNF597 6 94.0 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF479 4 6.4 Weakly correlated
9 ZNF317 3 99.0 Weakly correlated
10 ZNF2 1 99.0 Weakly correlated
11 ZNF18 1 160.0 Weakly correlated
12 ZNF101 1 43.0 Weakly correlated
13 ZNF554 1 99.0 Weakly correlated
14 ZNF528 1 43.0 Weakly correlated
15 ZFP37 1 99.0 Weakly correlated
16 ZNF680 1 28.9 Highly correlated
17 ZNF534 1 19.6 Moderately correlated
18 ZNF506 1 28.9 Highly correlated
19 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF584 99.0 Weakly correlated
5 ZNF589 28.9 Highly correlated
6 ZNF597 94.0 Weakly correlated