ZRdb KZFP & Repeats
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LTR_LTR13

  • Name
    LTR13
  • Repbase
    LTR13
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000406
Description :

LTR of class II endogenous retrovirus HERVK13. 6 bp target site dups.The tandem duplication at pos 313-368 and 366-422 is absent in somecopies and tripled in others.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggcggcaagccacccaggcgccgaggcaagagaccgagggcacgagctgttccagtataataaaatatataaaacaagaatagttataccagatatagatcttagatatgattatatatgaatatcattaatcattagtttgtagcaattactctttattccaatattataataatcctcgctctataatcataacctaggaaaaaccaggccatacagagataggagctgaggggacatagtgaggagtgaccagaagacaagagtgcgagccttctgttatgcccggacagggccaccagagggctccttggtctagcggtaacgccagcgtctgggaagacgcccgttgccaggcggaccgtggtctagcggtagcgtnagtgtcaaggaaaaacacccgctacttagcagaccgggaaagggagtctccctttccccgggggagtttagagaagactctgctcctccacctcttgtggagggcctgacatcagtcaggcccgcccgcagttatccggaggcctaaccgtctccctgtgatgctgtgcttcagtggtcacgctcctagtccgccttcatgttccatcctgtacacctggctctgccttctagatagcagtagcaaattagtgaaagtactaaaagtctctgatatgcagaaataatggcgtaagctgtctctctctctctcctctctctctctgcctcggctgccaggcagggaagggccccctgtccagtggacacgtgacccacgtgaccttacctatcattggagatggctcacactccttaccctgcccctttgccttgtatccaataaatancagcgcagccnggcattcggggccactaccggtctccgcgccttggtggtagtggtcccccgggcccagctgtcttttcttttatctctttgtcttgtgtctttatttctacactctctcgtctccgcacacggggagaaaancccaccgaccctgtggggctggtccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 44 99.0 Weakly correlated
2 ZNF2 42 99.0 Weakly correlated
3 ZNF394 24 99.0 Weakly correlated
4 ZNF680 23 28.9 Highly correlated
5 ZNF18 20 160.0 Weakly correlated
6 ZNF766 19 43.0 Weakly correlated
7 ZFP37 15 99.0 Weakly correlated
8 ZNF324 14 99.0 Weakly correlated
9 ZNF597 12 94.0 Weakly correlated
10 ZNF124 10 43.0 Weakly correlated
11 ZKSCAN1 10 160.0 Weakly correlated
12 ZNF584 8 99.0 Weakly correlated
13 ZNF101 7 43.0 Weakly correlated
14 ZNF528 7 43.0 Weakly correlated
15 ZNF263 7 180.0 Weakly correlated
16 ZNF558 6 99.0 Weakly correlated
17 ZNF554 6 99.0 Weakly correlated
18 ZNF610 6 28.9 Highly correlated
19 ZNF589 6 28.9 Highly correlated
20 ZNF701 6 28.9 Highly correlated
21 ZNF257 6 0.0 Weakly correlated
22 ZFP69B 6 99.0 Weakly correlated
23 ZNF675 5 8.6 Weakly correlated
24 ZNF333 5 99.0 Weakly correlated
25 ZNF479 5 6.4 Weakly correlated
26 ZNF585B 4 99.0 Weakly correlated
27 ZKSCAN8 4 160.0 Weakly correlated
28 ZNF175 4 94.0 Weakly correlated
29 ZNF197 4 99.0 Weakly correlated
30 ZNF534 3 19.6 Moderately correlated
31 ZNF425 2 94.0 Weakly correlated
32 ZNF441 2 43.0 Weakly correlated
33 ZNF641 2 99.0 Weakly correlated
34 ZNF222 2 43.0 Weakly correlated
35 ZIM3 2 87.0 Weakly correlated
36 ZNF320 2 28.9 Highly correlated
37 ZNF317 2 99.0 Weakly correlated
38 ZNF85 1 28.9 Highly correlated
39 ZNF705B 1 28.9 Highly correlated
40 ZNF671 1 94.0 Weakly correlated
41 ZNF808 1 19.6 Moderately correlated
42 ZNF695 1 28.9 Highly correlated
43 ZNF75A 1 94.0 Weakly correlated
44 ZNF735 1 28.9 Highly correlated
45 ZNF727 1 19.6 Moderately correlated
46 ZNF705D 1 28.9 Highly correlated
47 ZNF587 1 28.9 Highly correlated
48 ZNF563 1 28.9 Highly correlated
49 ZNF547 1 74.0 Weakly correlated
50 ZNF490 1 43.0 Weakly correlated
51 ZNF417 1 28.9 Highly correlated
52 ZNF354C 1 99.0 Weakly correlated
53 ZNF273 1 28.9 Highly correlated
54 ZNF264 1 99.0 Weakly correlated
55 ZNF251 1 94.0 Weakly correlated
56 ZNF224 1 69.0 Weakly correlated
57 ZNF223 1 43.0 Weakly correlated
58 ZNF182 1 99.0 Weakly correlated
59 ZNF160 1 74.0 Weakly correlated
60 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 18 99.0 Weakly correlated
2 ZNF597 11 94.0 Weakly correlated
3 ZNF680 10 28.9 Highly correlated
4 ZNF18 10 160.0 Weakly correlated
5 ZNF257 5 0.0 Weakly correlated
6 ZFP37 3 99.0 Weakly correlated
7 ZNF675 2 8.6 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZNF101 2 43.0 Weakly correlated
10 ZNF585B 2 99.0 Weakly correlated
11 ZNF534 1 19.6 Moderately correlated
12 ZNF641 1 99.0 Weakly correlated
13 ZNF264 1 99.0 Weakly correlated
14 ZNF528 1 43.0 Weakly correlated
15 ZNF554 1 99.0 Weakly correlated
16 ZNF589 1 28.9 Highly correlated
17 ZNF175 1 94.0 Weakly correlated
18 ZNF273 1 28.9 Highly correlated
19 ZNF558 1 99.0 Weakly correlated
20 ZNF417 1 28.9 Highly correlated
21 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF18 160.0 Weakly correlated
2 ZNF2 99.0 Weakly correlated
3 ZNF597 94.0 Weakly correlated
4 ZNF680 28.9 Highly correlated